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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
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HMMER3/f [3.2.1 | June 2018] NAME long.4.aln LENG 75 MAXL 167 ALPH DNA RF no MM no CONS yes CS no MAP yes DATE Tue May 28 13:12:03 2019 NSEQ 2 EFFN 2.000000 CKSUM 4254883388 STATS LOCAL MSV -7.9031 0.72215 STATS LOCAL VITERBI -9.4337 0.72215 STATS LOCAL FORWARD -3.6540 0.72215 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.20862 1.43722 1.53118 1.39624 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 0.00000 * 1 1.98342 0.60779 2.04641 1.66785 1 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 2 1.98342 0.60779 2.04641 1.66785 2 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 3 0.56139 2.08489 1.86185 1.89791 3 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 4 0.56139 2.08489 1.86185 1.89791 4 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 5 1.97267 2.25870 0.46443 2.05625 5 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 0.51083 0.91629 6 2.31486 2.12647 2.41211 0.36768 6 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.28818 2.60848 2.42319 2.42940 7 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.31486 2.12647 2.41211 0.36768 8 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.46232 0.33808 2.58153 2.07174 9 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.46232 0.33808 2.58153 2.07174 10 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.46232 0.33808 2.58153 2.07174 11 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.46232 0.33808 2.58153 2.07174 12 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.28818 2.60848 2.42319 2.42940 13 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.31486 2.12647 2.41211 0.36768 14 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.28818 2.60848 2.42319 2.42940 15 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.28818 2.60848 2.42319 2.42940 16 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.38910 2.82844 0.25233 2.62837 17 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.31486 2.12647 2.41211 0.36768 18 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.31486 2.12647 2.41211 0.36768 19 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.31486 2.12647 2.41211 0.36768 20 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.46232 0.33808 2.58153 2.07174 21 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.28818 2.60848 2.42319 2.42940 22 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.31486 2.12647 2.41211 0.36768 23 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 1.08498 1.08670 1.94700 1.70340 24 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.38910 2.82844 0.25233 2.62837 25 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.28818 2.60848 2.42319 2.42940 26 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.31486 2.12647 2.41211 0.36768 27 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.28818 2.60848 2.42319 2.42940 28 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.31486 2.12647 2.41211 0.36768 29 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.38910 2.82844 0.25233 2.62837 30 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.09289 1.89038 1.88803 1.01509 31 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.31486 2.12647 2.41211 0.36768 32 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.38910 2.82844 0.25233 2.62837 33 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.46232 0.33808 2.58153 2.07174 34 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.46232 0.33808 2.58153 2.07174 35 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.46232 0.33808 2.58153 2.07174 36 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.31486 2.12647 2.41211 0.36768 37 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.28818 2.60848 2.42319 2.42940 38 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.28818 2.60848 2.42319 2.42940 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.38910 2.82844 0.25233 2.62837 40 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.46232 0.33808 2.58153 2.07174 41 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 1.88401 1.14290 1.03416 1.75097 42 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.28818 2.60848 2.42319 2.42940 43 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.31486 2.12647 2.41211 0.36768 44 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.38910 2.82844 0.25233 2.62837 45 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.38910 2.82844 0.25233 2.62837 46 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.28818 2.60848 2.42319 2.42940 47 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.38910 2.82844 0.25233 2.62837 48 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.46232 0.33808 2.58153 2.07174 49 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.46232 0.33808 2.58153 2.07174 50 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.28818 2.60848 2.42319 2.42940 51 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.28818 2.60848 2.42319 2.42940 52 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.28818 2.60848 2.42319 2.42940 53 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.31486 2.12647 2.41211 0.36768 54 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.46232 0.33808 2.58153 2.07174 55 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.46232 0.33808 2.58153 2.07174 56 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.31486 2.12647 2.41211 0.36768 57 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.28818 2.60848 2.42319 2.42940 58 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.38910 2.82844 0.25233 2.62837 59 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.38910 2.82844 0.25233 2.62837 60 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 0.28818 2.60848 2.42319 2.42940 61 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 0.28818 2.60848 2.42319 2.42940 62 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 0.28818 2.60848 2.42319 2.42940 63 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 0.28818 2.60848 2.42319 2.42940 64 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 2.31486 2.12647 2.41211 0.36768 65 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 66 2.38910 2.82844 0.25233 2.62837 66 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 67 2.31486 2.12647 2.41211 0.36768 67 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 68 2.46232 0.33808 2.58153 2.07174 68 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 69 2.31486 2.12647 2.41211 0.36768 69 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 70 0.28818 2.60848 2.42319 2.42940 70 a - - - 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547 71 0.56139 2.08489 1.86185 1.89791 71 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 72 1.98342 0.60779 2.04641 1.66785 72 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 73 0.56139 2.08489 1.86185 1.89791 73 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 74 1.97267 2.25870 0.46443 2.05625 74 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 75 1.98342 0.60779 2.04641 1.66785 75 c - - - 1.38629 1.38629 1.38629 1.38629 0.03279 3.43399 * 1.46634 0.26236 0.00000 * //