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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
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HMMER3/f [3.2.1 | June 2018] NAME long.1.aln LENG 79 MAXL 173 ALPH DNA RF no MM no CONS yes CS no MAP yes DATE Tue May 28 13:12:02 2019 NSEQ 2 EFFN 2.000000 CKSUM 620049805 STATS LOCAL MSV -7.9531 0.72095 STATS LOCAL VITERBI -9.7409 0.72095 STATS LOCAL FORWARD -3.6444 0.72095 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.15122 1.47367 1.35292 1.62872 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 0.00000 * 1 1.98342 0.60779 2.04641 1.66785 1 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 2 1.91091 1.78233 1.95844 0.61114 2 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 3 0.56139 2.08489 1.86185 1.89791 3 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 4 1.91091 1.78233 1.95844 0.61114 4 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 5 1.97267 2.25870 0.46443 2.05625 5 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 6 1.97267 2.25870 0.46443 2.05625 6 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 7 1.98342 0.60779 2.04641 1.66785 7 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 8 0.56139 2.08489 1.86185 1.89791 8 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 9 1.97267 2.25870 0.46443 2.05625 9 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 0.51083 0.91629 10 2.38910 2.82844 0.25233 2.62837 10 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.28818 2.60848 2.42319 2.42940 11 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.28818 2.60848 2.42319 2.42940 12 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.38910 2.82844 0.25233 2.62837 13 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.28818 2.60848 2.42319 2.42940 14 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.28818 2.60848 2.42319 2.42940 15 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.38910 2.82844 0.25233 2.62837 16 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.46232 0.33808 2.58153 2.07174 17 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.38910 2.82844 0.25233 2.62837 18 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.38910 2.82844 0.25233 2.62837 19 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.28818 2.60848 2.42319 2.42940 20 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.38910 2.82844 0.25233 2.62837 21 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.28818 2.60848 2.42319 2.42940 22 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.46232 0.33808 2.58153 2.07174 23 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.28818 2.60848 2.42319 2.42940 24 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.38910 2.82844 0.25233 2.62837 25 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.46232 0.33808 2.58153 2.07174 26 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.38910 2.82844 0.25233 2.62837 27 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.28818 2.60848 2.42319 2.42940 28 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.46232 0.33808 2.58153 2.07174 29 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.38910 2.82844 0.25233 2.62837 30 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.28818 2.60848 2.42319 2.42940 31 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.28818 2.60848 2.42319 2.42940 32 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.38910 2.82844 0.25233 2.62837 33 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.28818 2.60848 2.42319 2.42940 34 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.38910 2.82844 0.25233 2.62837 35 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.46232 0.33808 2.58153 2.07174 36 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.31486 2.12647 2.41211 0.36768 37 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.46232 0.33808 2.58153 2.07174 38 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.28818 2.60848 2.42319 2.42940 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.31486 2.12647 2.41211 0.36768 40 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.46232 0.33808 2.58153 2.07174 41 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.28818 2.60848 2.42319 2.42940 42 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.38910 2.82844 0.25233 2.62837 43 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.28818 2.60848 2.42319 2.42940 44 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.28818 2.60848 2.42319 2.42940 45 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.46232 0.33808 2.58153 2.07174 46 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.28818 2.60848 2.42319 2.42940 47 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.38910 2.82844 0.25233 2.62837 48 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.31486 2.12647 2.41211 0.36768 49 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.46232 0.33808 2.58153 2.07174 50 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.28818 2.60848 2.42319 2.42940 51 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.38910 2.82844 0.25233 2.62837 52 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.28818 2.60848 2.42319 2.42940 53 a - 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- - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 78 0.56139 2.08489 1.86185 1.89791 78 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 79 1.97267 2.25870 0.46443 2.05625 79 g - - - 1.38629 1.38629 1.38629 1.38629 0.03279 3.43399 * 1.46634 0.26236 0.00000 * //