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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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HMMER3/f [3.2.1 | June 2018]
NAME  long.1.aln
LENG  79
MAXL  173
ALPH  DNA
RF    no
MM    no
CONS  yes
CS    no
MAP   yes
DATE  Tue May 28 13:12:02 2019
NSEQ  2
EFFN  2.000000
CKSUM 620049805
STATS LOCAL MSV       -7.9531  0.72095
STATS LOCAL VITERBI   -9.7409  0.72095
STATS LOCAL FORWARD   -3.6444  0.72095
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.15122  1.47367  1.35292  1.62872
          1.38629  1.38629  1.38629  1.38629
          0.33647  3.73767  1.33977  1.46634  0.26236  0.00000        *
      1   1.98342  0.60779  2.04641  1.66785      1 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
      2   1.91091  1.78233  1.95844  0.61114      2 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
      3   0.56139  2.08489  1.86185  1.89791      3 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
      4   1.91091  1.78233  1.95844  0.61114      4 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
      5   1.97267  2.25870  0.46443  2.05625      5 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
      6   1.97267  2.25870  0.46443  2.05625      6 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
      7   1.98342  0.60779  2.04641  1.66785      7 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
      8   0.56139  2.08489  1.86185  1.89791      8 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
      9   1.97267  2.25870  0.46443  2.05625      9 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  0.51083  0.91629
     10   2.38910  2.82844  0.25233  2.62837     10 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.28818  2.60848  2.42319  2.42940     11 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.28818  2.60848  2.42319  2.42940     12 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.38910  2.82844  0.25233  2.62837     13 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.28818  2.60848  2.42319  2.42940     14 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.28818  2.60848  2.42319  2.42940     15 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.38910  2.82844  0.25233  2.62837     16 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.46232  0.33808  2.58153  2.07174     17 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.38910  2.82844  0.25233  2.62837     18 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.38910  2.82844  0.25233  2.62837     19 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.28818  2.60848  2.42319  2.42940     20 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.38910  2.82844  0.25233  2.62837     21 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.28818  2.60848  2.42319  2.42940     22 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.46232  0.33808  2.58153  2.07174     23 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   0.28818  2.60848  2.42319  2.42940     24 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.38910  2.82844  0.25233  2.62837     25 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.46232  0.33808  2.58153  2.07174     26 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.38910  2.82844  0.25233  2.62837     27 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   0.28818  2.60848  2.42319  2.42940     28 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.46232  0.33808  2.58153  2.07174     29 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.38910  2.82844  0.25233  2.62837     30 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.28818  2.60848  2.42319  2.42940     31 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   0.28818  2.60848  2.42319  2.42940     32 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.38910  2.82844  0.25233  2.62837     33 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.28818  2.60848  2.42319  2.42940     34 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.38910  2.82844  0.25233  2.62837     35 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.46232  0.33808  2.58153  2.07174     36 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.31486  2.12647  2.41211  0.36768     37 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.46232  0.33808  2.58153  2.07174     38 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.28818  2.60848  2.42319  2.42940     39 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.31486  2.12647  2.41211  0.36768     40 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.46232  0.33808  2.58153  2.07174     41 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.28818  2.60848  2.42319  2.42940     42 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.38910  2.82844  0.25233  2.62837     43 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.28818  2.60848  2.42319  2.42940     44 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.28818  2.60848  2.42319  2.42940     45 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     46   2.46232  0.33808  2.58153  2.07174     46 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     47   0.28818  2.60848  2.42319  2.42940     47 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     48   2.38910  2.82844  0.25233  2.62837     48 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     49   2.31486  2.12647  2.41211  0.36768     49 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     50   2.46232  0.33808  2.58153  2.07174     50 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     51   0.28818  2.60848  2.42319  2.42940     51 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     52   2.38910  2.82844  0.25233  2.62837     52 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     53   0.28818  2.60848  2.42319  2.42940     53 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     54   2.46232  0.33808  2.58153  2.07174     54 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     55   2.31486  2.12647  2.41211  0.36768     55 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     56   2.46232  0.33808  2.58153  2.07174     56 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     57   0.28818  2.60848  2.42319  2.42940     57 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     58   2.31486  2.12647  2.41211  0.36768     58 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     59   2.46232  0.33808  2.58153  2.07174     59 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     60   0.28818  2.60848  2.42319  2.42940     60 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     61   0.28818  2.60848  2.42319  2.42940     61 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     62   2.38910  2.82844  0.25233  2.62837     62 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     63   2.46232  0.33808  2.58153  2.07174     63 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     64   2.31486  2.12647  2.41211  0.36768     64 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     65   2.31486  2.12647  2.41211  0.36768     65 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     66   2.46232  0.33808  2.58153  2.07174     66 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     67   2.31486  2.12647  2.41211  0.36768     67 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     68   1.88401  1.14290  1.03416  1.75097     68 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     69   1.09289  1.89038  1.88803  1.01509     69 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     70   0.28818  2.60848  2.42319  2.42940     70 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.33647  3.73767  1.33977  1.46634  0.26236  1.09861  0.40547
     71   1.91091  1.78233  1.95844  0.61114     71 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
     72   1.98342  0.60779  2.04641  1.66785     72 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
     73   0.56139  2.08489  1.86185  1.89791     73 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
     74   0.56139  2.08489  1.86185  1.89791     74 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
     75   0.56139  2.08489  1.86185  1.89791     75 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
     76   1.91091  1.78233  1.95844  0.61114     76 t - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
     77   1.98342  0.60779  2.04641  1.66785     77 c - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
     78   0.56139  2.08489  1.86185  1.89791     78 a - - -
          1.38629  1.38629  1.38629  1.38629
          0.06454  3.46574  3.46574  1.46634  0.26236  1.60944  0.22314
     79   1.97267  2.25870  0.46443  2.05625     79 g - - -
          1.38629  1.38629  1.38629  1.38629
          0.03279  3.43399        *  1.46634  0.26236  0.00000        *
//