Mercurial > repos > dave > pipelign
view test-data/files/input.merge.2.fas @ 0:9a3a2e04f47a draft default tip
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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
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>K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1 ---------------------------CTACCTCTTCTTCTGCTAGACTGCC-------A TTTAACAGCAGTTGAGTTGATACTACTGGCCTAATTCCATGTGT >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1 -------------TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCA-------G TCTAGCAGAAGAAGAGGTAGTAAT-------TAGATC------- >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1 ---TAACGCCACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAAC---AAGC CCCAGAAGACGAAGGG---------------------------- >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1 GTGGAGA--------GAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCC----- -TTGGCACTTATCTGGGA-------------CGATCT------- >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1 TCCGAAGATCGTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGA--C TCTGTCTCT-------------------------CTC------- >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1 CCAAGTA-----TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAATC CTAGGAAAATGTCTA----------------------------- >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1 -----TA-----TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAATC CTAGGAAAATGTCTAAC-----------------AGC------- >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1 ----TGC-----TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAAGGCCATATC TTCCCTAAAAAATTAGC-----------------CTGTCT---- >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1 AAGTGCAA------------------GCAATCTGATTCACCCGATTTCTTCC-------A ATTATGATGACAGGTGTAGGTCCTACTAATACAGT--------- >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 GAT--------------------------------------------------------- ----------------------------GGTTTTATAGACATCACTATGAAAGCCCTCAT CCAAGAAAAAGTTCAGAAGTACACA------------------TCCCACTAGG------- -- >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 AA---------------------------------------------------------- -------------------------------TTTATCAAGAGCCATTTAAAAATCTGAAA ACAGGAAAATATGCAAGAATGAGGGG--------------TGCCCACACTAAT------- -- >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC---- -----AGGAAGCAACCACCACTCTATT-----------------------TTGTGCATC- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT---- -----AGCCAGTAGATCCTAGACTAT-------------------------AGCCCTGG- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 --------------------------------------GGAGCT----AGAACGAT---- -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGG A----------------------------------------------------------- -- >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC TTGTGGGGCTGTTGGCTCTGGTCTGCT--------------------------------- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC TGGTGGGGCAGTTGGCTCTGGTC------------------------------------- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 A-------------------------------------GGGATTATGGAAAACAGA---- -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGATTAGAACATGG---- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 ------------CGGGCACAC----------------------------ACT-------- ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTAG--TTAGC ------------------------------------------------------------ -- >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 ------------------------------------------------------------ -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAG--TTAGC CAGA----------------------------------------GAGCTCCCA------- -- >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 ---------------------------------------------------------TGC TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA TATT-------------------------------------------GACCAC------- -- >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 ------------GCTGCTCCC----------------------------ACCCTATCTTG TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCCATCCAATCA------- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 ------------------------------------------------------------ TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCAATTCTGAAA--CTGGA TAAA--------------------------------------CAGCAGTTGTT------- -- >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 ------------------------------------------------------------ --------------------------------TGCCAAGGATCCGTTCACTAA--TCGAA TGGA---------TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT------- -- >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 ------------------------------------------------------------ TTCTGGGAAGTTCAAT----------------TAGGAATACCACATCCCGCAGGGTTAAA AAAG---------AAAAAATCAGT------------------AACAGTACTGG------- -- >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 ------------------------------------------------------------ CTATG------TTTAC----------------TTCTAATCCCGAATCCTGCAAAGCTAGA TAAAT----TGCTTGTAACTCAGTC-----------------TTCTGATTTGT------- -- >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC TCCCAAAGAAGACAAG----ATATCCTTGATC---------------------------- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA---------------------- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 -------------------------------------------------GGCTAATTCAC TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACCACCCACAAG------- -------------------------------------------GCTACTTCCC------- -- >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACTATTTTT---------- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 -----------------------------------AATAGTACTTT---CCTGATTCCAG CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCCTTTGTGTG-------- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATCAG-------------- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA----------------------- ------------------------------------------------------------ -- >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 -----------------------------------------ACAGC---GACGAAGAGCT CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGCAGTAAGTA-------- --------------------------------------------TTACAT---------- -- >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 ------------------------------------------------------------ -------------------------------------AGCCATTGCTCTCCAA--TTACT GTGA---------TATTTCTCATGTTCATCTTGGGCCTT----AACTATTCCATCTAAAA AT