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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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>K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
------------------------------------------------------------
--GATCCTGC-------------ATATAAGCAGCAGCTTTTTGCCTTTACTGGTTCTCTC
TGGTTAGACCAGATCTGAGCCTGGG-----------------------
>K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
------------------------------------------------------------
-CAGATACCT-------------AAATGATCAACAGCTCCTGGGGATT-TGGGGTTGCTC
TGGAAAACTCATTTGCACCCCTGCT-----------------------
>K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
GTCTGG----------GGCATCAAGCAGCTCCAGG-------CAAGAATGCTGGCTGTGG
AAAGATACCT-------------AAAGGATCAACAGCTCC--------------------
------------------------------------------------
>K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
-----------------------------------------------------ACAGTAG
AAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATC---------TGGGTCCCCTC
C-------------TGAGGATTGGT-----------------------
>K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
-----------------------------------------------------ACAGTAG
AAAAATTCCCCTCCACAATTAAAACTGTGGTTACAATTTC---------TGGGTCCCCTC
C-------------TGAGGATTGCT-----------------------
>K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
TCCTG----------------------ACTCCAA------------------TACTGTAG
GAGATTCCAC-----------------------CAATATT---------TGAGGGCTTCC
CACCCCCTGCGTCCCAGAAGTT--------------------------
>K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
--------------------------ATCCTCAT-------------GCATCTGTTCTAC
CATGTCATTTTT-----------CCACATGTTAAAATTTTCTGT-----CACATTTAC--
-CAATACT----------------------------------------
>K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
--------------------------TT---------------------GGTAAATGTGA
CAGAAAATTTTA-----------ACATGTGGAAAAATGACATGG-----TAGA---AC--
-AGATGCA----------------------TGAGGATATAA-------
>K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
-------------------------------------------------GGTAAATGTGA
CAGAAAATTTTA-----------ACATGTGGAAAAATGACATGG-----TAGA---AC--
-AGATGCA----------------------TGAGGATATAAT-----C
>K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
------------------------------------------------------------
------------------------------TTAAAATTTTCTGT-----CACATTTAC--
-CAATACTACTTCTTGTGGGTTGGGGTCTGTGGGTACACAGGCATGTG
>K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
------------------------------------------------CACCCATCCAAA
GGAATTGAGGTT-----------CTTT---CTGATGTTTTTTGT-----CTGGTGTGG--
-TAAGTCCCCACCTCGACAG----------------------------
>K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
CTTTA----------------TATTTTTTCTTAC-------------CCCCTGGCCTTAA
CCGAATTTTTTC-----------CCATCGATCTAATTCTCC--------CCCGCTTAA--
------------------------------------------------
>K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
TCC------------------CTGTTCG---------------------GGCGCCACTGC
TAGAGATTTTCC-----------ACACTGACTAAAAGGGTCTGA-----GGGA---TCTC
TAGTTACC----------------------------------------
>K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
----------------AGTAAGTAGTACCTGTAAC--GCAACCTATACCAATAG-TAGCA
ATAGTAGCATTA-----------GTAGTAGCACTAATAAT--------------------
------------------------------------------------
>K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
--------------------------------------CAACCTATACCAATAG-TAGCA
ATAGTAGCATTA-----------GTAGTAGCAATAATAATAGCAATAGTTGAGTGGTC--
------------------------------------------CA----
>K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
ACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAA-AAGAA
ATAGTAGCCCG-------------------------------------------------
------------------------------------------------
>K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
-------------------------------------------TATGGTACCAGTTAGAG
AAAGAACCCCTA-----------GTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGC--
------------------------------------------TAACAG