Mercurial > repos > dave > pipelign
view test-data/files/NODE_2.aln @ 0:9a3a2e04f47a draft default tip
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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
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>K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1 ---------------------------------------------------------TTA TCAGAAGG------------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAC ACCC-------AGTGGGGGGACATCAAGCAGCCA-- >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1 -----------------------------------------------GTTTTCAGCATTA TCAGAAGG------------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAA ACAC-------AGTGGGGGGACAT------------ >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1 -------------------------------CAGAAGTGATACCCATGTTTTCAGCATTA TCAGAAGG------------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAA A----------------------------------- >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1 -------------------------------TGT-------------AACACCTCAGTCA TTA------CACAGG--CCTGTCCAAAGGTATCCTTTGAGCCAATTCC--CATACATTAT TGTG-------------------------------- >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1 -------------------------------ATG-------------TATG--------- ------------GGA--ATTGGCTGAAAGGATACCTTTGGACAGGCCT--GAGTAATGAC TGAGGTGTTACAA---------CTTGTC-------- >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1 -------------------------------AA--------------GCTTGTGTAATTG TTAATTTC---TCTG--TCCCACTCCATCCAGGTCGTGTGATTCCAAC--TCTGTTCCAG --------------------------AG-------- >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1 -------------------------------AA--------------AATTTCAAA---- --------------------------AATTGGGCCTGAAAATCCATAC--AATACTCCAG TATT-TGCCATAAAGAAAAAAGACAGTA-------- >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1 -------------------------------GC--------------CTGCATGGAATGG ATGACCCGGAGAGAG--AAGTGTTAGAGTGGAGGTTTGAGAGCCACCT--AGCAATTCA- ------------------------------------ >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1 -------------------------------GTA-------------CTTTCTATAGTGA ATAGAGTTAGGCAGG--TATATTCACCATTATCGTTTGAGACCCACCT--CCCAACCC-- ------------------------------------ >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1 -----------------------------------------------------GGT---- --------------------------GATATGGGCTGATGTACCATTT--GCCCCTGGAT GTTC-TGCACTATAGGGTAATTTTGGCTGACCTGAT >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1 -------------------------------ATAGAG----------CTTCCTTTAGTTG CCCCCCTATCTTTAT--TGTGACGAGGGGACGTTGCCAAAGAGTGACC--TG-------- ------------------AGG--------------- >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1 ------------------------------------------------------------ -------TTTTTCAG--TTCGCTTAGATGAAGACTTCAGGCAGTATAC--TGCATTTACC ATACCTAGTATAAACAATGAG--------------- >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1 ------------------------ATAACCACAGAA-----------------AGCATAG TAATATGG------------------GGAAAGACTCCTAAATTTAAACTGCCCATACAAA A---------------GGAAACAT------------ >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1 ---------------GACCAGCAAAGCACCTCTGGAA----------AGGTGAAGGGGCA GTAGTAATACAAGAT--AATAGTGACATAAAAGTAGT----------------------- ------------------------------------ >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1 ---------------------------------GGAA----------AGGTGAAGGGGCA GTAGTAATACAAGAT--AATAGTGACATAACAGTAGTG---------------------- -----------------CGAAGAAGAAAAGCAAA-- >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1 ------------------------------------------------TTTTATGGTTCA TAATCCACTCCATGT--ACTGGTTCTTTTAGAATCTCTCATTTTTCT--GCCCGTTCTAG CT---------------------------------- >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1 -------------GAAGCAGAGCTAGAACTGGCAGAA----------AACAGAGAGATTC TAAAATAACCAGTAC--ATGGAGTGTATTATGACC------------------------- ------------------------------------ >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1 -------------------------------------------------------CTCTA GTGTCCATTCATTGT--GTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTCCAT CTCTCCT----------------------------- >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1 TGATTTGTTGTGTCAGTTAGGGTGACAACT------------------TTTTGTGTTCCT CTATTAGTAACATAT--CCTGCTTTTCCTA------------------------------ ------------------------------------ >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1 ----------------------------------GAA----------GTCTTGAGTTCTC TTATTAA--------------GTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGT CTTTTTTC---------------------------- >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1 ------------------------------------------------------------ ----------------------TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGT CTTTTTTCTTT--ATGGCAAATACTGGAGTATTG-- >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1 ---------------GGGGGGAACAGTGCAGGGGAAA----------GAATAGTAGACAT AATAGCAACAGACAT--ACAAACTAAAGAATTACAA------------------------ ---------------------------------A-- >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1 ------------------------------------------------------------ ------------------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCC TCATCCTGTCTCCTTGCCACACAATCATCACCTG-- >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1 ------------------------------------------------CAGGATTAACTG CGAATCTT---TCTAGCTCCCTTGTTGCCCATACTATATGTTTTAATT--TATATTTTTT --------------------------CT-------T