Mercurial > repos > dave > pipelign
diff test-data/files/long.63.hmm @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/files/long.63.hmm Mon Jun 10 16:04:10 2019 -0400 @@ -0,0 +1,233 @@ +HMMER3/f [3.2.1 | June 2018] +NAME long.63.aln +LENG 70 +MAXL 160 +ALPH DNA +RF no +MM no +CONS yes +CS no +MAP yes +DATE Tue May 28 13:12:04 2019 +NSEQ 2 +EFFN 2.000000 +CKSUM 1581685751 +STATS LOCAL MSV -8.3992 0.72064 +STATS LOCAL VITERBI -9.5309 0.72064 +STATS LOCAL FORWARD -3.5039 0.72064 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.06213 1.62061 1.56496 1.39671 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 0.28818 2.60848 2.42319 2.42940 1 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.38910 2.82844 0.25233 2.62837 2 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 2.31486 2.12647 2.41211 0.36768 3 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 4 0.28818 2.60848 2.42319 2.42940 4 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 5 0.28818 2.60848 2.42319 2.42940 5 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 6 2.38910 2.82844 0.25233 2.62837 6 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 7 2.31486 2.12647 2.41211 0.36768 7 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 8 0.28818 2.60848 2.42319 2.42940 8 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 9 2.38910 2.82844 0.25233 2.62837 9 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 10 2.31486 2.12647 2.41211 0.36768 10 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 11 0.28818 2.60848 2.42319 2.42940 11 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 12 2.46232 0.33808 2.58153 2.07174 12 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 13 2.46232 0.33808 2.58153 2.07174 13 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 14 2.31486 2.12647 2.41211 0.36768 14 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 15 2.38910 2.82844 0.25233 2.62837 15 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 16 2.31486 2.12647 2.41211 0.36768 16 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 17 0.28818 2.60848 2.42319 2.42940 17 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 18 0.28818 2.60848 2.42319 2.42940 18 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 19 2.46232 0.33808 2.58153 2.07174 19 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 20 2.38910 2.82844 0.25233 2.62837 20 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 21 2.46232 0.33808 2.58153 2.07174 21 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 22 0.28818 2.60848 2.42319 2.42940 22 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 23 0.28818 2.60848 2.42319 2.42940 23 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 24 2.46232 0.33808 2.58153 2.07174 24 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 25 2.46232 0.33808 2.58153 2.07174 25 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 26 2.31486 2.12647 2.41211 0.36768 26 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 27 0.28818 2.60848 2.42319 2.42940 27 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 28 2.31486 2.12647 2.41211 0.36768 28 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 29 0.28818 2.60848 2.42319 2.42940 29 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 30 2.46232 0.33808 2.58153 2.07174 30 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 31 2.46232 0.33808 2.58153 2.07174 31 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 32 0.28818 2.60848 2.42319 2.42940 32 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 33 0.28818 2.60848 2.42319 2.42940 33 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 34 2.31486 2.12647 2.41211 0.36768 34 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 35 0.28818 2.60848 2.42319 2.42940 35 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 36 2.38910 2.82844 0.25233 2.62837 36 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 37 2.31486 2.12647 2.41211 0.36768 37 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 38 0.28818 2.60848 2.42319 2.42940 38 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 39 2.38910 2.82844 0.25233 2.62837 39 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 40 2.46232 0.33808 2.58153 2.07174 40 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 41 0.28818 2.60848 2.42319 2.42940 41 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 42 0.28818 2.60848 2.42319 2.42940 42 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 43 2.31486 2.12647 2.41211 0.36768 43 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 44 0.28818 2.60848 2.42319 2.42940 44 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 45 2.38910 2.82844 0.25233 2.62837 45 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 46 2.31486 2.12647 2.41211 0.36768 46 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 47 0.28818 2.60848 2.42319 2.42940 47 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 48 2.38910 2.82844 0.25233 2.62837 48 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 49 2.46232 0.33808 2.58153 2.07174 49 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 50 0.28818 2.60848 2.42319 2.42940 50 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 51 2.31486 2.12647 2.41211 0.36768 51 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 52 2.31486 2.12647 2.41211 0.36768 52 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 53 0.28818 2.60848 2.42319 2.42940 53 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 54 2.38910 2.82844 0.25233 2.62837 54 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 55 2.31486 2.12647 2.41211 0.36768 55 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 56 0.28818 2.60848 2.42319 2.42940 56 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 57 2.38910 2.82844 0.25233 2.62837 57 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 58 2.31486 2.12647 2.41211 0.36768 58 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 59 0.28818 2.60848 2.42319 2.42940 59 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 60 2.38910 2.82844 0.25233 2.62837 60 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 61 2.46232 0.33808 2.58153 2.07174 61 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 62 0.28818 2.60848 2.42319 2.42940 62 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 63 2.46232 0.33808 2.58153 2.07174 63 c - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 64 2.31486 2.12647 2.41211 0.36768 64 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 65 0.28818 2.60848 2.42319 2.42940 65 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 66 0.28818 2.60848 2.42319 2.42940 66 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 67 2.31486 2.12647 2.41211 0.36768 67 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 68 0.28818 2.60848 2.42319 2.42940 68 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 69 0.28818 2.60848 2.42319 2.42940 69 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 70 2.31486 2.12647 2.41211 0.36768 70 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.02469 3.71357 * 1.46634 0.26236 0.00000 * +//