Mercurial > repos > dave > pipelign
diff test-data/files/long.39.hmm @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/files/long.39.hmm Mon Jun 10 16:04:10 2019 -0400 @@ -0,0 +1,320 @@ +HMMER3/f [3.2.1 | June 2018] +NAME long.39.aln +LENG 99 +MAXL 200 +ALPH DNA +RF no +MM no +CONS yes +CS no +MAP yes +DATE Tue May 28 13:12:03 2019 +NSEQ 2 +EFFN 2.000000 +CKSUM 3832268543 +STATS LOCAL MSV -9.7613 0.73289 +STATS LOCAL VITERBI -11.5188 0.73289 +STATS LOCAL FORWARD -2.6614 0.73289 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.28054 1.52683 1.53556 1.23942 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 2.31486 2.12647 2.41211 0.36768 1 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 1.12273 2.17004 0.88086 1.92408 2 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 2.01896 1.01168 2.12953 0.95527 3 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 4 1.09289 1.89038 1.88803 1.01509 4 t - 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