Mercurial > repos > dave > pipelign
diff test-data/files/long.29.hmm @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/files/long.29.hmm Mon Jun 10 16:04:10 2019 -0400 @@ -0,0 +1,269 @@ +HMMER3/f [3.2.1 | June 2018] +NAME long.29.aln +LENG 82 +MAXL 176 +ALPH DNA +RF no +MM no +CONS yes +CS no +MAP yes +DATE Tue May 28 13:12:04 2019 +NSEQ 2 +EFFN 2.000000 +CKSUM 793374180 +STATS LOCAL MSV -8.9232 0.73665 +STATS LOCAL VITERBI -10.8392 0.73665 +STATS LOCAL FORWARD -3.0454 0.73665 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.39622 1.43714 1.34448 1.36967 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 1.84050 1.95342 1.03654 1.06480 1 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.01896 1.01168 2.12953 0.95527 2 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 1.88401 1.14290 1.03416 1.75097 3 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 4 2.38910 2.82844 0.25233 2.62837 4 g - 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