diff test-data/files/NODE_39.aln @ 0:9a3a2e04f47a draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/files/NODE_39.aln	Mon Jun 10 16:04:10 2019 -0400
@@ -0,0 +1,88 @@
+>K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
+AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC----
+-----AGGAAGCAACCACCACTCTATT-----------------------TTGTGCATC-
+-------------------------------------------------
+>K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
+AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT----
+-----AGCCAGTAGATCCTAGACTAT-------------------------AGCCCTGG-
+-------------------------------------------------
+>K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
+--------------------------------------GGAGCT----AGAACGAT----
+-----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGG
+A------------------------------------------------
+>K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
+----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC
+TTGTGGGGCTGTTGGCTCTGGTCTGCT---------------------------------
+-------------------------------------------------
+>K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
+TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC
+TGGTGGGGCAGTTGGCTCTGGTC-------------------------------------
+-------------------------------------------------
+>K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
+A-------------------------------------GGGATTATGGAAAACAGA----
+-----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGATTAGAACATGG----
+-------------------------------------------------
+>K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
+------------CGGGCACAC----------------------------ACT--------
+ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTAG--TTAGC
+-------------------------------------------------
+>K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
+------------------------------------------------------------
+-CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAG--TTAGC
+CAGA------------------------------------GAGCTCCCA
+>K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
+---------------------------------------------------------TGC
+TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA
+TATT---------------------------------------GACCAC
+>K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
+------------GCTGCTCCC----------------------------ACCCTATCTTG
+TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCCATCCAATCA-------
+-------------------------------------------------
+>K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
+------------------------------------------------------------
+TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCAATTCTGAAA--CTGGA
+TAAA----------------------------------CAGCAGTTGTT
+>K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
+------------------------------------------------------------
+--------------------------------TGCCAAGGATCCGTTCACTAA--TCGAA
+TGGA-----TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT
+>K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
+------------------------------------------------------------
+TTCTGGGAAGTTCAAT----------------TAGGAATACCACATCCCGCAGGGTTAAA
+AAAG-----AAAAAATCAGT------------------AACAGTACTGG
+>K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
+------------------------------------------------------------
+CTATG------TTTAC----------------TTCTAATCCCGAATCCTGCAAAGCTAGA
+TAAATTGCTTGTAACTCAGTC-----------------TTCTGATTTGT
+>K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
+------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
+TCCCAAAGAAGACAAG----ATATCCTTGATC----------------------------
+-------------------------------------------------
+>K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
+------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
+TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA----------------------
+-------------------------------------------------
+>K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
+-------------------------------------------------GGCTAATTCAC
+TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACCACCCACAAG-------
+---------------------------------------GCTACTTCCC
+>K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
+---------------------------------ACAACGGAATTGG---AGGAAATGAAC
+CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACTATTTTT----------
+-------------------------------------------------
+>K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
+-----------------------------------AATAGTACTTT---CCTGATTCCAG
+CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCCTTTGTGTG--------
+-------------------------------------------------
+>K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
+-----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT
+CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATCAG--------------
+-------------------------------------------------
+>K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
+--------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT
+CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA-----------------------
+-------------------------------------------------
+>K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
+-----------------------------------------ACAGC---GACGAAGAGCT
+CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGCAGTAAGTA--------
+----------------------------------------TTACAT---