Mercurial > repos > dave > pipelign
diff test-data/files/cdhit.log @ 0:9a3a2e04f47a draft default tip
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author | dave |
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date | Mon, 10 Jun 2019 16:04:10 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/files/cdhit.log Mon Jun 10 16:04:10 2019 -0400 @@ -0,0 +1,35 @@ +================================================================ +Program: CD-HIT, V4.8.1 (+OpenMP), May 14 2019, 14:40:47 +Command: cd-hit-est -c 0.8 -n 5 -i long.good.fas -o grp -d 0 + -T 1 + +Started: Tue May 28 13:09:56 2019 +================================================================ + Output +---------------------------------------------------------------- +total seq: 100 +longest and shortest : 70 and 70 +Total letters: 7000 +Sequences have been sorted + +Approximated minimal memory consumption: +Sequence : 0M +Buffer : 1 X 12M = 12M +Table : 1 X 0M = 0M +Miscellaneous : 0M +Total : 12M + +Table limit with the given memory limit: +Max number of representatives: 4000000 +Max number of word counting entries: 98487020 + + comparing sequences from 0 to 100 + + 100 finished 84 clusters + +Approximated maximum memory consumption: 12M +writing new database +writing clustering information +program completed ! + +Total CPU time 0.04