Mercurial > repos > dave > pipelign
comparison test-data/pipelign-out1.fasta @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1 | |
| 2 ------------------------------------------------------------ | |
| 3 ------------------------------------------------------------ | |
| 4 -------------GATCCTGC----------------------------------ATATA | |
| 5 AGCAGCAGCTTTTTGC-CTTTACTGGTTCTCTCTGGTTAGACCAGATCTGAGCCTGGG-- | |
| 6 ----------------------------------- | |
| 7 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 | |
| 8 ------------------------------------------------------------ | |
| 9 ------------------------------------------------------------ | |
| 10 -------------AGCAGAATAGGCGTTACTC-----GACAGAGGAGAGCAAGAAATGTA | |
| 11 GCCAGTAGATCCTAGA-CTATA-----------------------------GCCCTGG-- | |
| 12 ----------------------------------- | |
| 13 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1 | |
| 14 ------------------------------------------------------------ | |
| 15 ------------------------------------------------------------ | |
| 16 ------------CAGATACCT----------------------------------AAATG | |
| 17 ATCAACAGCTCCTGGG-GATT-TGGGGTTGCTCTGGAAAACTCATTTGCACCCCTGCT-- | |
| 18 ----------------------------------- | |
| 19 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1 | |
| 20 ---------------------------------------------GTCTGGGGCATCAAG | |
| 21 CAGCTCCAGGCAAGAATGCTGGCTGT---------------------------------- | |
| 22 --------GG-AAAGATACCT----------------------------------AAAGG | |
| 23 ATCAACAGCTCC------------------------------------------------ | |
| 24 ----------------------------------- | |
| 25 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1 | |
| 26 ---------------------------------------------TCCTGACTC------ | |
| 27 CAATACTGTAGGAGATTCC----------------------------------------- | |
| 28 -----------ACCAATATTT----------------------------------GAGGG | |
| 29 CTTCCCACCCCCTGCG-TCCC-AGAAGTT------------------------------- | |
| 30 ----------------------------------- | |
| 31 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1 | |
| 32 ------------CGAGCAAGCTTCACAGGAGTTAAAAAATTGGATGACAGAAAC-CTTGT | |
| 33 TGGTCCAAAATGCGAACCCAGAT------------------------------------- | |
| 34 ------------------------------------------------------------ | |
| 35 ------------------------------------------------------------ | |
| 36 ----------------------------------- | |
| 37 >K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1 | |
| 38 ----------------------TCACAGGAGGTAAAAAATTGGATGACAGAAAC-CTTGT | |
| 39 TGGTCCAAAATGCGAACCCAGATTGT---------------------------------- | |
| 40 -----------AAGACTA------------------------------------------ | |
| 41 ------------------------------------------------------------ | |
| 42 ----------------------------------- | |
| 43 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1 | |
| 44 ------------------------------------------------------------ | |
| 45 ------------------------------------------------------------ | |
| 46 -----------------ATTT--------------------------TAAAAGCATTGGG | |
| 47 ACCAGCGGCTAC----------ACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAT | |
| 48 GAC-------------------------------- | |
| 49 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1 | |
| 50 --------------------------------------------TGACAGAAAC-CTAGT | |
| 51 TGGTCCAAAATGCGAACCCAGATTGT---------------------------------- | |
| 52 -----------AAGACAATTT--------------------------TAAAAGCATTGGG | |
| 53 ACCAGC------------------------------------------------------ | |
| 54 ----------------------------------- | |
| 55 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 | |
| 56 -----------------------------------------------------CACTTAT | |
| 57 TAAAAGAAAAGGGGGGACTGGA-------------------------------------- | |
| 58 -----------AGGGCTAATT--------------------------CACTCCCAAAGAA | |
| 59 GACAAGATATCCTTGA-TC----------------------------------------- | |
| 60 ----------------------------------- | |
| 61 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 | |
| 62 -----------------------------------------------------------T | |
| 63 TAAAAGAAAAGGGGGGACTGGA-------------------------------------- | |
| 64 -----------AGGGCTAATT--------------------------CACTGCCAAAGAA | |
| 65 GACAAGATATCCTTGA-TCTGAGGA----------------------------------- | |
| 66 ----------------------------------- | |
| 67 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 | |
| 68 ------------------------------------------------------------ | |
| 69 ------------------------------------------------------------ | |
| 70 -------------GGCTAATT--------------------------CACTCCCAACGAA | |
| 71 GACAAGATATCCTTGA-TCTGTGGATGTACCACCCACAAGGCTACTTCCC---------- | |
| 72 ----------------------------------- | |
| 73 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 | |
| 74 ------------------------------------------------------------ | |
| 75 --------ACAACGGAATTGG--------------------------------------- | |
| 76 -------------AGGAAATG--------------------------AACCAGTAGATAA | |
| 77 ATTAGTCAGTGCTGGA-ATCAGGAAAGTACTATTTTT----------------------- | |
| 78 ----------------------------------- | |
| 79 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 | |
| 80 ------------------------------------------------------------ | |
| 81 ----------AATAGTACTTT--------------------------------------- | |
| 82 -------------CCTGATTC--------------------------CAGCACTGACTAA | |
| 83 ATTATCTACTTGTTCA-TTTCCTCCAATTCCTTTGTGTG--------------------- | |
| 84 ----------------------------------- | |
| 85 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 | |
| 86 ------------------------------------------------------------ | |
| 87 -----GAAGAAGCGGAGACAGC-------------------------------------- | |
| 88 ---------G-ACGAAGAGCT-----------------------CATCAGAACAGTCAGA | |
| 89 CTCATCAAGCTTCTCA-ATCAAATCAG--------------------------------- | |
| 90 ----------------------------------- | |
| 91 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 | |
| 92 --------------------------------------------------------CTAT | |
| 93 GGCAGGAAGAAGCGGAGACAGC-------------------------------------- | |
| 94 ---------G-ACGAAGAGCT-----------------------CATCAGAACAGTCAGA | |
| 95 CTCATCAAGCTTCTGT-A------------------------------------------ | |
| 96 ----------------------------------- | |
| 97 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 | |
| 98 ------------------------------------------------------------ | |
| 99 -----------------ACAGC-------------------------------------- | |
| 100 ---------G-ACGAAGAGCT-----------------------CATCAGAACAGACAGA | |
| 101 CTCATCAAGCTTCTCT-ATCAAAGCAGTAAGTATTACAT--------------------- | |
| 102 ----------------------------------- | |
| 103 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1 | |
| 104 ------------------------------------------------------------ | |
| 105 -----------AAGCTTGTGTA-------------------------------------- | |
| 106 -----------ATTGTTAATT-----TCTCT-------------GTCCCACTCCATCCAG | |
| 107 GTCGTGTGATTCCAAC-TCTGTTCCAG-------------------------AG------ | |
| 108 ----------------------------------- | |
| 109 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1 | |
| 110 ------------------------------------------------------------ | |
| 111 -----------AAAATTTCAAA-------------------------------------- | |
| 112 ------------------------------------------------------AATTGG | |
| 113 GCCTGAAAATCCATAC-AATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTA------ | |
| 114 ----------------------------------- | |
| 115 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 | |
| 116 ------------------------------------------------------------ | |
| 117 ------------------------------------------------------------ | |
| 118 ---------------AGCCAT--------------------------------------- | |
| 119 ---------TGCTCTC-CAATTACTGTGATATTTCTCATGTTCATCTTGGGCCTTAACTA | |
| 120 TTCCATCTAAAAAT--------------------- | |
| 121 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1 | |
| 122 ------------------------------------------------------------ | |
| 123 ------------------------------------------------------------ | |
| 124 ---------------TGATTT-GTTGTGTCAG------------------TTAGGGTGAC | |
| 125 AACTTTTTGTGTTCCT-CTATTAGTAACATATCCTGCTTTTCC----------------- | |
| 126 ------------TA--------------------- | |
| 127 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 | |
| 128 ------------------------------------------------------------ | |
| 129 ------------------------------------------------------------ | |
| 130 ---------G-AGGGGGAGTT-GTTGTCTGTACCCCAGACCTGAAGCTCTCTTCTTGTGG | |
| 131 GGCTGTTGGCTCTGGT-CTGCT-------------------------------------- | |
| 132 ----------------------------------- | |
| 133 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 | |
| 134 ------------------------------------------------------------ | |
| 135 ------------------------------------------------------------ | |
| 136 -----TTCTG-AGGGGGAGAT-GTTGTCTCTAGCCCAGACCTGAAGCTCTCTTCTGGTGG | |
| 137 GGCAGTTGGCTCTGGT-C------------------------------------------ | |
| 138 ----------------------------------- | |
| 139 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1 | |
| 140 ------------------------------------------------------------ | |
| 141 ------------------------------------------------------------ | |
| 142 -------------------CT-CTAGTGTCCATTCATTGTGTGG------CTCCCTCTGT | |
| 143 GGCCCTTGGTCTTCTT-GGGCTTGTTCCATCTCTCCT----------------------- | |
| 144 ----------------------------------- | |
| 145 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1 | |
| 146 ------------------------------------------------------------ | |
| 147 ---------ATAGAGCTTCCTTTAGTTGCCCCC-----------------------CTAT | |
| 148 CTTTATTGTG-ACGAGGGGAC-GTTGCCAAAGAGT--GACCTGAGG-------------- | |
| 149 ------------------------------------------------------------ | |
| 150 ----------------------------------- | |
| 151 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1 | |
| 152 ------------------------------------------------------------ | |
| 153 ------------------------------------------------------------ | |
| 154 ----------------------GAAGTCTTGAGTTCTCTTATTAA-----GTTCTCTGAA | |
| 155 ATCTACTAATTTTCTC-CATTTAGTACTGTCTTTTTTC---------------------- | |
| 156 ----------------------------------- | |
| 157 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1 | |
| 158 ------------------------------------------------------------ | |
| 159 ------------------------------------------------------------ | |
| 160 ---------------------------------------------------TTCTCTGAA | |
| 161 ATCTACTAATTTTCTC-CATTTAGTACTGTCTTTTTTCTT------TATGGCAAATACTG | |
| 162 GAGTAT------TG--------------------- | |
| 163 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 | |
| 164 ------------------------------------------------------------ | |
| 165 ------------------------------------------------------------ | |
| 166 ------------------------TGCCAAGGATCC------------------------ | |
| 167 GTTCACTAATCGAATG-GATCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT- | |
| 168 ----------------------------------- | |
| 169 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1 | |
| 170 ------------------------------------------------------------ | |
| 171 ----------GGTGATATGGGCTGATGTACC-------------ATTTGCCCCTGGATGT | |
| 172 TCTGCACTAT-AGGGTAATTTTGGCTGACCTGAT-------------------------- | |
| 173 ------------------------------------------------------------ | |
| 174 ----------------------------------- | |
| 175 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1 | |
| 176 ------------------------------------------------------------ | |
| 177 ------CAGAAGTGATA----------------------------------CCCATGTTT | |
| 178 TCAGCATTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------ | |
| 179 -AAACACCATGCTAAA-------------------------------------------- | |
| 180 ----------------------------------- | |
| 181 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1 | |
| 182 ------------------------------------------------------------ | |
| 183 ------------------------------------------------------------ | |
| 184 ------TTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------ | |
| 185 -AAACACCATGCTACACCCAGTGGGGGGACATCAAGCAGCCA------------------ | |
| 186 ----------------------------------- | |
| 187 >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1 | |
| 188 ------------------------------------------------------------ | |
| 189 --------------------------------------------------------GTTT | |
| 190 TCAGCATTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------ | |
| 191 -AAACACCATGCTAAACACAGTGGGGGGACAT---------------------------- | |
| 192 ----------------------------------- | |
| 193 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1 | |
| 194 ------------------------------------------------------------ | |
| 195 ----------TGTAACACC------------------------------TCAGTCATTAC | |
| 196 ACAGGCCTGT-CCAAAGGTATCCTTTGAGCCAATTC------------------------ | |
| 197 -CCATACATTATTGTG-------------------------------------------- | |
| 198 ----------------------------------- | |
| 199 >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1 | |
| 200 ------------------------------------------------------------ | |
| 201 ----------ATGTATG------------------------------------------- | |
| 202 --GGAATTGG-CTGAAAGGATACCTTTGGACAGGCC------------------------ | |
| 203 -TGAGTAATGACTGAG----GTGTTACAACTTGTC------------------------- | |
| 204 ----------------------------------- | |
| 205 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1 | |
| 206 ------------------------------------------------------------ | |
| 207 ------------------------------------------------------------ | |
| 208 --------GA-CCAGCAAAGCACCTC---------T----GGAAAGGTGAAGGGGCAGTA | |
| 209 GTAATACAAGATAATA-GTGACATAAAAGTAGT--------------------------- | |
| 210 ----------------------------------- | |
| 211 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1 | |
| 212 ------------------------------------------------------------ | |
| 213 ------------------------------------------------------------ | |
| 214 ----------------------------------------GGAAAGGTGAAGGGGCAGTA | |
| 215 GTAATACAAGATAATA-GTGACATAACAGTAGTGCGAAGAAGAAAAGCAAA--------- | |
| 216 ----------------------------------- | |
| 217 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1 | |
| 218 ------------------------------------------------------------ | |
| 219 ------------------------------------------------------------ | |
| 220 ----------------GGGG--------------------GGAACAGTGCAGGGGAAAGA | |
| 221 ATAGTA-GACATAATA-GCAACAGACATACAAACTAAAGAATTACAAA------------ | |
| 222 ----------------------------------- | |
| 223 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1 | |
| 224 ------------------------------------------------------------ | |
| 225 ------------------------------------------------------------ | |
| 226 ---------------------------------------------TTTTATGGTTCATAA | |
| 227 TCCACTCCATGTACTG-GTTCTTTTAGAATCTCTCATTTTTCTGCCCGTTCTAGCT---- | |
| 228 ----------------------------------- | |
| 229 >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1 | |
| 230 ------------------------------------------------------------ | |
| 231 ------------------------------------------------------------ | |
| 232 ----------------GAAGCAGAGCTAGAACTGGC----AGAAAACAGAGAGATTCTAA | |
| 233 AATAACCAGTACATGG-AGTGTATTATGACC----------------------------- | |
| 234 ----------------------------------- | |
| 235 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1 | |
| 236 ------------------------------------------------------------ | |
| 237 --------CAGAGGAGGTCT---------------------------------------- | |
| 238 -------------CTCGACGCAGGACTCGGCTTGCT----GAAGGGCGCACGG----CAA | |
| 239 GAGGCGAGGGGCGGCG-ACT---------------------------------------- | |
| 240 ----------------------------------- | |
| 241 >K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1 | |
| 242 ------------------------------------------------------------ | |
| 243 --GGAAACCAGAGGAGCTCT---------------------------------------- | |
| 244 -------------CTCGACGCAGGACTCGGCTTGCT----GAAGCGCGCACGG----CAA | |
| 245 GAGGCGAGGGGCG----------------------------------------------- | |
| 246 ----------------------------------- | |
| 247 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 | |
| 248 ------------------------------------------------------------ | |
| 249 -----------------------------------------------------------C | |
| 250 GGGCACACAC-TACTTGAAGCACTCA---------------------------------- | |
| 251 -AGGCAAGCTTTATTG-AGGCTTAAGCAGTGGGTTCCCTAGTTAGC-------------- | |
| 252 ----------------------------------- | |
| 253 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 | |
| 254 ------------------------------------------------------------ | |
| 255 ------------------------------------------------------------ | |
| 256 -------------CTTGAAGCACTCA---------------------------------- | |
| 257 -AGGCAAGCTTTATTG-CGGCTTAATCAGTGGGTTCCCTAGTTAGCCAGAGAGCT--CCC | |
| 258 A---------------------------------- | |
| 259 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 | |
| 260 ------------------------------------------------------------ | |
| 261 ------------------------------------------------------------ | |
| 262 ---------------TGCTGCTGGCT---------------------------------- | |
| 263 -CAGCTCGTCTCATTC-ATTCCCTTACAGTAGGCCATCCAATCACACTACATATTGACCA | |
| 264 C---------------------------------- | |
| 265 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 | |
| 266 ------------------------------------------------------------ | |
| 267 ------------------------------------------------------GC---T | |
| 268 GCTCCCACCC-TATCTTGTGCTGGCT---------------------------------- | |
| 269 -CAGCTCGTCTCATTG-TTTCCCTTACAGTAGGCCATCCAATCA---------------- | |
| 270 ----------------------------------- | |
| 271 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 | |
| 272 ------------------------------------------------------------ | |
| 273 ------------------------------------------------------CTATGT | |
| 274 TTACTTCTAA-T-CCCGAATCCTGCA---------------------------------- | |
| 275 -AAGCTAGATAAATTG-CTTGTAACTCAGT----CTTCTGATTTGT-------------- | |
| 276 ----------------------------------- | |
| 277 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 | |
| 278 ------------------------------------------------------------ | |
| 279 TCCTCTGTCGAGTAACGCCTATTCT----------------------------GCTATGA | |
| 280 CGACACCCAA-T-TCTGAAACTGGAT---------------------------------- | |
| 281 -AAAC---AGCAGTTG-TT----------------------------------------- | |
| 282 ----------------------------------- | |
| 283 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1 | |
| 284 ------------------------------------------------------------ | |
| 285 ------------------------------------------------------------ | |
| 286 ------------------TAGGAACCAAAGA--------------------------AAG | |
| 287 ATAGTTAAGTGTTTCA-ATTGTGGCACAGAAGGGCACACAGCCAGAAATTGCAGG----- | |
| 288 ----------------------------------- | |
| 289 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1 | |
| 290 -------------TAAGGTGTTTTAC-----------------------------TAAAC | |
| 291 TTTTCCATGTTGTAATCCTCATCCT----------------------------GTCTCCT | |
| 292 TGCCACACAA-T-CATCACCTG-------------------------------------- | |
| 293 ------------------------------------------------------------ | |
| 294 ----------------------------------- | |
| 295 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1 | |
| 296 ------------------------------------------------------------ | |
| 297 ------------------------------------------------------GCCACA | |
| 298 GAGGGAGCCA-CACAATGAATGGACA---------------------------------- | |
| 299 -CTATAGCTTTTAGAG-GAGCTTAAGAATGAAGCT-----GTTAGA-------------- | |
| 300 ----------------------------------- | |
| 301 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1 | |
| 302 ------------------------------------------------------------ | |
| 303 -------TAACGCCACCTTTGCCTA--------GTGTTACGAAACTGCCAGAGGA----- | |
| 304 -----------TAGATGGAACAAGCCC----------------------CAGAAG-ACGA | |
| 305 AGGG-------------------------------------------------------- | |
| 306 ----------------------------------- | |
| 307 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 | |
| 308 ------------------------------------------------------------ | |
| 309 -------AGGGATTA-------------------TGGAAAACAGATGGCAGGTGATGATT | |
| 310 GTGTGGCAAT-TAGACAGGATGAGGAT----------------------TAGAAC-ATG- | |
| 311 ---G-------------------------------------------------------- | |
| 312 ----------------------------------- | |
| 313 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1 | |
| 314 ------------------------------------------------------------ | |
| 315 ------------CTACCTCTTCTTC---------TGCTAGACTGCCATTTAACAG----- | |
| 316 -----------CAGTTGAGTTGATACTACT---------------GGCCTAATTCCATG- | |
| 317 -TGT-------------------------------------------------------- | |
| 318 ----------------------------------- | |
| 319 >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1 | |
| 320 ----------------------------------------------------------TT | |
| 321 AGGCCAGTAGTATCAACTCAACTGC---------TGTTAAATGGCAGTCTAGCAG----- | |
| 322 -----------AAGAAGAGGTAGTAAT----------------------TAGATC----- | |
| 323 ------------------------------------------------------------ | |
| 324 ----------------------------------- | |
| 325 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1 | |
| 326 ------------------------------------------------------------ | |
| 327 ----GTGGAGA---------------------------GAGAGACAGAGACAGAT---CC | |
| 328 ATTCGATTAG-TGAACGGATCC---------------------------TTGGCACTTAT | |
| 329 CTGGGACGATCT------------------------------------------------ | |
| 330 ----------------------------------- | |
| 331 >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1 | |
| 332 ------------------------------------------------------------ | |
| 333 ----TCCGAAGATCG-------------------TCCCAGATAAGTGCCAAGGAT---CC | |
| 334 GTTCACTACT-CGAATGGATCTGA--C---------------------TCTGTCTCT--- | |
| 335 ---------CTC------------------------------------------------ | |
| 336 ----------------------------------- | |
| 337 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1 | |
| 338 ------------------------------------------------------------ | |
| 339 ----CCAAGTA------------------------TCCCCATAAGTTTCATAGAT---AT | |
| 340 GATGCCCTAA-GCCATGGAGCCAAATC---------------------CTAGGAAAATGT | |
| 341 CTA--------------------------------------------------------- | |
| 342 ----------------------------------- | |
| 343 >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1 | |
| 344 ------------------------------------------------------------ | |
| 345 ---------TA------------------------TCCCCATAAGTTTCATCGAT---AT | |
| 346 GTTGCCCTAA-GCGATGGAGCCAAATC---------------------CTAGGAAAATGT | |
| 347 CTAAC----AGC------------------------------------------------ | |
| 348 ----------------------------------- | |
| 349 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1 | |
| 350 ------------------------------------------------------------ | |
| 351 --------TGC------------------------TCTGAAGAAAATTCCCTG------- | |
| 352 GCCTTCCCTT-GTAGTAAGGCCATATC---------------------TTCCCTAAAAAA | |
| 353 TTAGC----CTGTCT--------------------------------------------- | |
| 354 ----------------------------------- | |
| 355 >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1 | |
| 356 ------------------------------------------------------------ | |
| 357 ------------------------------------------------------------ | |
| 358 ------------------------------------------------------------ | |
| 359 -----CAGGATTAA--------CTGCGAATCTTTCTAGCTCCCTTGTTGCCCATACTATA | |
| 360 TGTTTTAATTTATATTTT------------TTCTT | |
| 361 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1 | |
| 362 ------------------------------------------------------------ | |
| 363 -------------AATAGCAATT------------------------------------- | |
| 364 ---------------------------------------------------------TGT | |
| 365 ACAAGCAGTTTTAGGC-TGACTTCGTGGATGCTTCCAGGGCTCTCGTC----------TA | |
| 366 GGATCAA---------------------------C | |
| 367 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1 | |
| 368 ------------------------------------------------------------ | |
| 369 ------------------------------------------------------------ | |
| 370 ---------------------------------------------------------TGT | |
| 371 GTTCAGCTGTACTATT-ATGGTTATAGCATTTT-----CCGTGAAATTGACAGATCTAAT | |
| 372 TACTACCTCTTCT---------------------- | |
| 373 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 | |
| 374 ------------------------------------------------------------ | |
| 375 ------------------------------------------------------------ | |
| 376 -----------------------------------------------------------T | |
| 377 TCTGGGAAGTTCAATT-AGGAATACCACATCCC-----GCAGGGTTAAAAAAGAAAAAAT | |
| 378 CAGTAACAGTACTGG-------------------- | |
| 379 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1 | |
| 380 ------------------------------------------------------------ | |
| 381 ------------------------------------------------------------ | |
| 382 ------------------------------------------------------------ | |
| 383 ------------TCCA-AGCCCTGTCTTATTCTTCTAGGTATGTGGCGCATAGCTCTACA | |
| 384 AGCTCCTTGTACTACTTCAATAA------------ | |
| 385 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1 | |
| 386 ------------------------------------------------------------ | |
| 387 --------------ACC-CATCT------------------------------------- | |
| 388 ---------------------------------------------------------TAT | |
| 389 AGCAAAATCCTTTCCA-AGCCCTGTCTTATTCTTCTAGGTATGTGGCGAATAGCTCTACA | |
| 390 ----------------------------------- | |
| 391 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1 | |
| 392 ------------------------------------------------------------ | |
| 393 ------------------------------------------------------------ | |
| 394 ------------------------------------------------------------ | |
| 395 -------------------------CTACTATTGCTACTAATGGTATAGGTTGCGTTACA | |
| 396 TGTACTACTTACTGCTTTGATAGAGAAGCTTGATG | |
| 397 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1 | |
| 398 ------------------------------------------------------------ | |
| 399 -------------TCTA-CATAG------------------------------------- | |
| 400 ---------------------------------------------------------TCT | |
| 401 CTAAAGGGTTCCTTTG-GTCCTTGTCTTATGTC------CAGAATGCTGGTAGGGCTATA | |
| 402 CATTC------------------------------ | |
| 403 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 | |
| 404 ------------------------------------------------------------ | |
| 405 ------------------------------------------A-----ATTGTGGGTCAC | |
| 406 AGTC------------TATTATGGGGTACCTGTGTG----GCAGGAAG------------ | |
| 407 -----CAACCACCAC--------------TCTATTTTGTGC--------ATC-------- | |
| 408 ----------------------------------- | |
| 409 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 | |
| 410 ------------------------------------------------------------ | |
| 411 ------------------------------------------GGAGCTAGAACGATTCGC | |
| 412 AGTT------------AATCCTGGCGTGTTAGAAAC----ATCAGAAGGC-------TG- | |
| 413 -TAGACAAATACTG-----------------------------------GGA-------- | |
| 414 ----------------------------------- | |
| 415 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1 | |
| 416 -------------------------T---------------------------------- | |
| 417 ---TTGATTGACTAACTCTGATT-----CACTTTGATCTTGTAGTGCTTGAATGATTCCT | |
| 418 AATG------------CATATTG-TGAGTC------------------------------ | |
| 419 ------------------------------------------------------------ | |
| 420 ----------------------------------- | |
| 421 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1 | |
| 422 -------------------------C-----------------------------TTCTT | |
| 423 CTGTTAGTGGTATTACTTCTGTTAGTGCTTTGGTACCTCTAAGGAGTTTACATAATTGCC | |
| 424 TTAC-------------------------------------------------------- | |
| 425 ------------------------------------------------------------ | |
| 426 ----------------------------------- | |
| 427 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1 | |
| 428 ------------------------------------------------------------ | |
| 429 -----------------------------------------AGGATTTTACATAATTGCC | |
| 430 TTAC------------TTAAATCCCTGGGT---------------AAATC-------TGA | |
| 431 CTTGCCCAATTCAAT--------------TTCCCCA-------------CTA-------- | |
| 432 ----------------------------------- | |
| 433 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1 | |
| 434 ------------------------------------------------------------ | |
| 435 --------------------------------------ACTTTATATTTATATAATTCAC | |
| 436 TTCT------------CCAATTGTCC---------------------------------- | |
| 437 ----CTCATCTCTCC--------------TCCTCCAGGTCTGAAGATCTCGG-------- | |
| 438 ----------------------------------- | |
| 439 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1 | |
| 440 -------------------------T-----------------------------CTTTG | |
| 441 CCTTGGTTGGAGCAACTCCTAATGGTTGAATTTTTACTACTTTATATTTATATAATTCCC | |
| 442 TTCT-------------------------------------------------------- | |
| 443 ------------------------------------------------------------ | |
| 444 ----------------------------------- | |
| 445 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1 | |
| 446 ------------------------------------------------------------ | |
| 447 ---TCGGAGTCATTGTTGCTATTACCACCATCTTTTGTTCATAGCAGCCCTGTAATATTT | |
| 448 GATT-------------------------------------------------------- | |
| 449 ------------------------------------------AACATC-TAA-------- | |
| 450 ----------------------------------- | |
| 451 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 | |
| 452 ------------------------------------------------------------ | |
| 453 -------------------------------------------------GATGGTTTTAT | |
| 454 AGACATCACT-ATGAAAGCCCTCATCCAAGAAAAAG----TTCAGAAGTA-------CA- | |
| 455 -CATCCCACTAGG----------------------------------------------- | |
| 456 ----------------------------------- | |
| 457 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 | |
| 458 ------------------------------------------------------------ | |
| 459 -----------------------------------------------------AATTTAT | |
| 460 CAAGAGCCAT-TTAAAAATCTGAAAACAGGAAAATA----TGCAAGAATGAGGGGTGCC- | |
| 461 -CACACTAAT-------------------------------------------------- | |
| 462 ----------------------------------- | |
| 463 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1 | |
| 464 ------------------------------------------------------------ | |
| 465 --------CCCCATATTACTATGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATT | |
| 466 GTTT-------------------------------------------------------- | |
| 467 ------------------------------------------TACATC-ATTAGTGT--- | |
| 468 ----------------------------------- | |
| 469 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1 | |
| 470 ------------------------------------------------------------ | |
| 471 --------------------------------------------AGTTCATGTATCCAGT | |
| 472 GGATATATAG-AAGCAGAAGTTATTCCAGCAGAAAC---------------AGGGGCTG- | |
| 473 -AAACAGCATAT------------------------------------------------ | |
| 474 ----------------------------------- | |
| 475 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1 | |
| 476 -------------------ATTGTAC-----------------------------ACATT | |
| 477 TAGAATGAAAAGTTATCCTGGTA-------------------GCAGTTCATGTAGCCAGT | |
| 478 GGATATATAG-AAGCAGA------------------------------------------ | |
| 479 ------------------------------------------------------------ | |
| 480 ----------------------------------- | |
| 481 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1 | |
| 482 ------------------------------------------------------------ | |
| 483 ------------------------------------------------------------ | |
| 484 ---TATAAAG-ACGCAGAAGTTATTCCAGCATACAC---------------AGGGCAGG- | |
| 485 -AAACAGCATATTTTC-TTTTCAAATTAG-----------------------------CA | |
| 486 G---------------------------------- | |
| 487 >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1 | |
| 488 ------------------------------------------------------------ | |
| 489 ------------------------------------------------------------ | |
| 490 ---TGCTAA---------------------------------------------TTTTA- | |
| 491 -AAAGACAATATTCTG-TTTCCTGCCCTGTTTCTGCTGGAATAACTTCTGCTTCTATATA | |
| 492 T---------------------------------- | |
| 493 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1 | |
| 494 ------------------------------------------------------------ | |
| 495 ---------GC-CTGCAT------------------------------------------ | |
| 496 ---------G-GAATGGATGACCCGGAGAGAGA--------------------------- | |
| 497 ------AGTGTTA-----------------GAGTGGAGGTTTGAGAGCCACCTAGCAATT | |
| 498 C------A--------------------------- | |
| 499 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1 | |
| 500 ------------------------------------------------------------ | |
| 501 ---------GTACTTTCT------------------------------------------ | |
| 502 ---------A-TAGTGAATAGAGTTAGGCAGGT--------------------------- | |
| 503 ------ATATTCA-----------------CCATTATCGTTTGAGACCCACCTCCCAACC | |
| 504 C---------------------------------- | |
| 505 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1 | |
| 506 ------------------------------------------------------------ | |
| 507 -------CAAC-CTATACCAA--------------------------------------- | |
| 508 ---TAG-TAG-CAATAGTAGCATTAGTAGTAGC--------------------------- | |
| 509 ------AATAATA-----------------ATAGCAATAGTTGAGTGGTCCA-------- | |
| 510 ----------------------------------- | |
| 511 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1 | |
| 512 ----------------AGTAAGTAGT-----------------------------ACCTG | |
| 513 TAAC--GCAAC-CTATACCAA--------------------------------------- | |
| 514 ---TAG-TAG-CAATAGTAGCATTAGTAGTAGC--------------------------- | |
| 515 ------ACTAATA-----------------AT---------------------------- | |
| 516 ----------------------------------- | |
| 517 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1 | |
| 518 ------------------------------------------------------------ | |
| 519 ---------CACCCATCC------------------------------------------ | |
| 520 ---------A-AAGGAATTGAGGTTCTTTCTGA--------------------------- | |
| 521 ------TGTTTTT-----------------TGTCTGGTGTGGTAAGTCCCCACCTCGACA | |
| 522 G---------------------------------- | |
| 523 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1 | |
| 524 ACAGTAATTGGAGAGCAATGGCTAGT-----------------------------GATTT | |
| 525 TAACCTGCCAC-CTGTAGTAG--------------------------------------- | |
| 526 ---CAA-AAG-AAATAGTAGCCCG------------------------------------ | |
| 527 ------------------------------------------------------------ | |
| 528 ----------------------------------- | |
| 529 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1 | |
| 530 ------------------------------------------------------------ | |
| 531 -------------TATGGTAC--------------------------------------- | |
| 532 ---CAGTTAG-AGAAAGAACCCCTAGTAGGAGC--------------------------- | |
| 533 ------AGAAACC-----------------TTCTATGTAGATGGGGCAGCTA-----ACA | |
| 534 G---------------------------------- | |
| 535 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1 | |
| 536 CT---------------------------------------------------------- | |
| 537 ------------TTATATTTT--------------------------------------- | |
| 538 ---TTCTT---------ACCCCCTGGCCTTAAC--------------------------- | |
| 539 ------CGAATTT-----------------TTTCCCATCGATCTAATTCTCC-----CCC | |
| 540 GC--TTAA--------------------------- | |
| 541 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1 | |
| 542 ------------------------------------------------------------ | |
| 543 ---ACAGTAGAAAAATTCCCC--------------------------------------- | |
| 544 ---TCCACCA-TTAAAACTGTGGTTACAATATC--------------------------- | |
| 545 -----TGGGTCCC-----------------CTCCTGAGGATTGGT--------------- | |
| 546 ----------------------------------- | |
| 547 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1 | |
| 548 ------------------------------------------------------------ | |
| 549 ---ACAGTAGAAAAATTCCCC--------------------------------------- | |
| 550 ---TCCACAA-TTAAAACTGTGGTTACAATTTC--------------------------- | |
| 551 -----TGGGTCCC-----------------CTCCTGAGGATTGCT--------------- | |
| 552 ----------------------------------- | |
| 553 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1 | |
| 554 --------ATC----------CTCAT-----------------------------GCATC | |
| 555 TGTTCTACCATGTCATTTTTC--------------------------------------- | |
| 556 ---CACATGT-TAAAATTTTCTGTCACATTTAC--------------------------- | |
| 557 ------CAATACT----------------------------------------------- | |
| 558 ----------------------------------- | |
| 559 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1 | |
| 560 --------TT-----------------------------------------------GGT | |
| 561 AAATGTGACAGAAAATTTTAA--------------------------------------- | |
| 562 ---CATGTGG-AAAAATGACATGGTAGA---AC--------------------------- | |
| 563 ------AGATGCA-------------------------------------TGAGGATATA | |
| 564 A---------------------------------- | |
| 565 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1 | |
| 566 ---------------------------------------------------------GGT | |
| 567 AAATGTGACAGAAAATTTTAA--------------------------------------- | |
| 568 ---CATGTGG-AAAAATGACATGGTAGA---AC--------------------------- | |
| 569 ------AGATGCA-------------------------------------TGAGGATATA | |
| 570 AT-----C--------------------------- | |
| 571 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1 | |
| 572 ------------------------------------------------------------ | |
| 573 ------------------------------------------------------------ | |
| 574 ---------T-TAAAATTTTCTGTCACATTTAC--------------------------- | |
| 575 ------CAATACTA---------------CTTCTTGTGGGTTGGGGTCTGTGGGTACACA | |
| 576 GGCATGTG--------------------------- | |
| 577 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1 | |
| 578 TCCCTGTTCG-----------------------------------------------GGC | |
| 579 GCCACTGCTAGAGATTTTCCA--------------------------------------- | |
| 580 ---CACTGAC-TAAAAGGGTCTGAGGGA---TCT-------------------------- | |
| 581 ----CTAGTTACC----------------------------------------------- | |
| 582 ----------------------------------- | |
| 583 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1 | |
| 584 ----AAGTGCAAGCAATCTGATTCAC-----------------------------CCGAT | |
| 585 TTCTTCCAATTATGATGACAGGTGT----------------------------AGGTCCT | |
| 586 ACTAATACAG-T------------------------------------------------ | |
| 587 ------------------------------------------------------------ | |
| 588 ----------------------------------- | |
| 589 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1 | |
| 590 ------------------------------------------------------------ | |
| 591 ------------------------------------------------------------ | |
| 592 --ATAACCACAGAAAGCATAGTAATATGGGGAAAGA----CTCCTAAATTTAAACTGCC- | |
| 593 -CATACAAAAGGAAAC-------------------------------------------- | |
| 594 ---------------------------AT------ | |
| 595 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1 | |
| 596 TTT--------------------------------------------------------- | |
| 597 ------------------------------------------------------------ | |
| 598 -----------TTCAGTTCGCTTAGATGAAGACTTC----AGGCAGTATACTGCATTTAC | |
| 599 CATACCTAGTATAAAC-AATGAG------------------------------------- | |
| 600 ----------------------------------- |