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comparison test-data/files/long.64.hmm @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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-1:000000000000 0:9a3a2e04f47a
1 HMMER3/f [3.2.1 | June 2018]
2 NAME long.64.aln
3 LENG 80
4 MAXL 174
5 ALPH DNA
6 RF no
7 MM no
8 CONS yes
9 CS no
10 MAP yes
11 DATE Tue May 28 13:12:04 2019
12 NSEQ 2
13 EFFN 2.000000
14 CKSUM 1595177567
15 STATS LOCAL MSV -8.1741 0.72087
16 STATS LOCAL VITERBI -9.7059 0.72087
17 STATS LOCAL FORWARD -3.6637 0.72087
18 HMM A C G T
19 m->m m->i m->d i->m i->i d->m d->d
20 COMPO 1.12278 1.57946 1.40266 1.50238
21 1.38629 1.38629 1.38629 1.38629
22 0.33647 3.73767 1.33977 1.46634 0.26236 0.00000 *
23 1 1.98342 0.60779 2.04641 1.66785 1 c - - -
24 1.38629 1.38629 1.38629 1.38629
25 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
26 2 1.97267 2.25870 0.46443 2.05625 2 g - - -
27 1.38629 1.38629 1.38629 1.38629
28 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
29 3 0.56139 2.08489 1.86185 1.89791 3 a - - -
30 1.38629 1.38629 1.38629 1.38629
31 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
32 4 1.97267 2.25870 0.46443 2.05625 4 g - - -
33 1.38629 1.38629 1.38629 1.38629
34 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
35 5 1.98342 0.60779 2.04641 1.66785 5 c - - -
36 1.38629 1.38629 1.38629 1.38629
37 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
38 6 0.56139 2.08489 1.86185 1.89791 6 a - - -
39 1.38629 1.38629 1.38629 1.38629
40 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
41 7 0.56139 2.08489 1.86185 1.89791 7 a - - -
42 1.38629 1.38629 1.38629 1.38629
43 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
44 8 1.97267 2.25870 0.46443 2.05625 8 g - - -
45 1.38629 1.38629 1.38629 1.38629
46 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
47 9 1.98342 0.60779 2.04641 1.66785 9 c - - -
48 1.38629 1.38629 1.38629 1.38629
49 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
50 10 1.91091 1.78233 1.95844 0.61114 10 t - - -
51 1.38629 1.38629 1.38629 1.38629
52 0.06454 3.46574 3.46574 1.46634 0.26236 0.51083 0.91629
53 11 2.31486 2.12647 2.41211 0.36768 11 t - - -
54 1.38629 1.38629 1.38629 1.38629
55 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
56 12 2.46232 0.33808 2.58153 2.07174 12 c - - -
57 1.38629 1.38629 1.38629 1.38629
58 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
59 13 0.28818 2.60848 2.42319 2.42940 13 a - - -
60 1.38629 1.38629 1.38629 1.38629
61 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
62 14 2.46232 0.33808 2.58153 2.07174 14 c - - -
63 1.38629 1.38629 1.38629 1.38629
64 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
65 15 0.28818 2.60848 2.42319 2.42940 15 a - - -
66 1.38629 1.38629 1.38629 1.38629
67 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
68 16 2.38910 2.82844 0.25233 2.62837 16 g - - -
69 1.38629 1.38629 1.38629 1.38629
70 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
71 17 2.38910 2.82844 0.25233 2.62837 17 g - - -
72 1.38629 1.38629 1.38629 1.38629
73 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
74 18 0.28818 2.60848 2.42319 2.42940 18 a - - -
75 1.38629 1.38629 1.38629 1.38629
76 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
77 19 2.38910 2.82844 0.25233 2.62837 19 g - - -
78 1.38629 1.38629 1.38629 1.38629
79 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
80 20 1.84050 1.95342 1.03654 1.06480 20 g - - -
81 1.38629 1.38629 1.38629 1.38629
82 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
83 21 2.31486 2.12647 2.41211 0.36768 21 t - - -
84 1.38629 1.38629 1.38629 1.38629
85 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
86 22 0.28818 2.60848 2.42319 2.42940 22 a - - -
87 1.38629 1.38629 1.38629 1.38629
88 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
89 23 0.28818 2.60848 2.42319 2.42940 23 a - - -
90 1.38629 1.38629 1.38629 1.38629
91 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
92 24 0.28818 2.60848 2.42319 2.42940 24 a - - -
93 1.38629 1.38629 1.38629 1.38629
94 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
95 25 0.28818 2.60848 2.42319 2.42940 25 a - - -
96 1.38629 1.38629 1.38629 1.38629
97 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
98 26 0.28818 2.60848 2.42319 2.42940 26 a - - -
99 1.38629 1.38629 1.38629 1.38629
100 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
101 27 0.28818 2.60848 2.42319 2.42940 27 a - - -
102 1.38629 1.38629 1.38629 1.38629
103 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
104 28 2.31486 2.12647 2.41211 0.36768 28 t - - -
105 1.38629 1.38629 1.38629 1.38629
106 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
107 29 2.31486 2.12647 2.41211 0.36768 29 t - - -
108 1.38629 1.38629 1.38629 1.38629
109 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
110 30 2.38910 2.82844 0.25233 2.62837 30 g - - -
111 1.38629 1.38629 1.38629 1.38629
112 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
113 31 2.38910 2.82844 0.25233 2.62837 31 g - - -
114 1.38629 1.38629 1.38629 1.38629
115 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
116 32 0.28818 2.60848 2.42319 2.42940 32 a - - -
117 1.38629 1.38629 1.38629 1.38629
118 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
119 33 2.31486 2.12647 2.41211 0.36768 33 t - - -
120 1.38629 1.38629 1.38629 1.38629
121 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
122 34 2.38910 2.82844 0.25233 2.62837 34 g - - -
123 1.38629 1.38629 1.38629 1.38629
124 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
125 35 0.28818 2.60848 2.42319 2.42940 35 a - - -
126 1.38629 1.38629 1.38629 1.38629
127 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
128 36 2.46232 0.33808 2.58153 2.07174 36 c - - -
129 1.38629 1.38629 1.38629 1.38629
130 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
131 37 0.28818 2.60848 2.42319 2.42940 37 a - - -
132 1.38629 1.38629 1.38629 1.38629
133 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
134 38 2.38910 2.82844 0.25233 2.62837 38 g - - -
135 1.38629 1.38629 1.38629 1.38629
136 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
137 39 0.28818 2.60848 2.42319 2.42940 39 a - - -
138 1.38629 1.38629 1.38629 1.38629
139 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
140 40 0.28818 2.60848 2.42319 2.42940 40 a - - -
141 1.38629 1.38629 1.38629 1.38629
142 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
143 41 0.28818 2.60848 2.42319 2.42940 41 a - - -
144 1.38629 1.38629 1.38629 1.38629
145 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
146 42 2.46232 0.33808 2.58153 2.07174 42 c - - -
147 1.38629 1.38629 1.38629 1.38629
148 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
149 43 2.46232 0.33808 2.58153 2.07174 43 c - - -
150 1.38629 1.38629 1.38629 1.38629
151 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
152 44 2.31486 2.12647 2.41211 0.36768 44 t - - -
153 1.38629 1.38629 1.38629 1.38629
154 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
155 45 2.31486 2.12647 2.41211 0.36768 45 t - - -
156 1.38629 1.38629 1.38629 1.38629
157 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
158 46 2.38910 2.82844 0.25233 2.62837 46 g - - -
159 1.38629 1.38629 1.38629 1.38629
160 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
161 47 2.31486 2.12647 2.41211 0.36768 47 t - - -
162 1.38629 1.38629 1.38629 1.38629
163 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
164 48 2.31486 2.12647 2.41211 0.36768 48 t - - -
165 1.38629 1.38629 1.38629 1.38629
166 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
167 49 2.38910 2.82844 0.25233 2.62837 49 g - - -
168 1.38629 1.38629 1.38629 1.38629
169 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
170 50 2.38910 2.82844 0.25233 2.62837 50 g - - -
171 1.38629 1.38629 1.38629 1.38629
172 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
173 51 2.31486 2.12647 2.41211 0.36768 51 t - - -
174 1.38629 1.38629 1.38629 1.38629
175 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
176 52 2.46232 0.33808 2.58153 2.07174 52 c - - -
177 1.38629 1.38629 1.38629 1.38629
178 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
179 53 2.46232 0.33808 2.58153 2.07174 53 c - - -
180 1.38629 1.38629 1.38629 1.38629
181 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
182 54 0.28818 2.60848 2.42319 2.42940 54 a - - -
183 1.38629 1.38629 1.38629 1.38629
184 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
185 55 0.28818 2.60848 2.42319 2.42940 55 a - - -
186 1.38629 1.38629 1.38629 1.38629
187 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
188 56 0.28818 2.60848 2.42319 2.42940 56 a - - -
189 1.38629 1.38629 1.38629 1.38629
190 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
191 57 0.28818 2.60848 2.42319 2.42940 57 a - - -
192 1.38629 1.38629 1.38629 1.38629
193 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
194 58 2.31486 2.12647 2.41211 0.36768 58 t - - -
195 1.38629 1.38629 1.38629 1.38629
196 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
197 59 2.38910 2.82844 0.25233 2.62837 59 g - - -
198 1.38629 1.38629 1.38629 1.38629
199 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
200 60 2.46232 0.33808 2.58153 2.07174 60 c - - -
201 1.38629 1.38629 1.38629 1.38629
202 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
203 61 2.38910 2.82844 0.25233 2.62837 61 g - - -
204 1.38629 1.38629 1.38629 1.38629
205 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
206 62 0.28818 2.60848 2.42319 2.42940 62 a - - -
207 1.38629 1.38629 1.38629 1.38629
208 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
209 63 0.28818 2.60848 2.42319 2.42940 63 a - - -
210 1.38629 1.38629 1.38629 1.38629
211 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
212 64 2.46232 0.33808 2.58153 2.07174 64 c - - -
213 1.38629 1.38629 1.38629 1.38629
214 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
215 65 2.46232 0.33808 2.58153 2.07174 65 c - - -
216 1.38629 1.38629 1.38629 1.38629
217 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
218 66 2.46232 0.33808 2.58153 2.07174 66 c - - -
219 1.38629 1.38629 1.38629 1.38629
220 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
221 67 0.28818 2.60848 2.42319 2.42940 67 a - - -
222 1.38629 1.38629 1.38629 1.38629
223 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
224 68 2.38910 2.82844 0.25233 2.62837 68 g - - -
225 1.38629 1.38629 1.38629 1.38629
226 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
227 69 0.28818 2.60848 2.42319 2.42940 69 a - - -
228 1.38629 1.38629 1.38629 1.38629
229 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
230 70 2.31486 2.12647 2.41211 0.36768 70 t - - -
231 1.38629 1.38629 1.38629 1.38629
232 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547
233 71 1.91091 1.78233 1.95844 0.61114 71 t - - -
234 1.38629 1.38629 1.38629 1.38629
235 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
236 72 1.97267 2.25870 0.46443 2.05625 72 g - - -
237 1.38629 1.38629 1.38629 1.38629
238 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
239 73 1.91091 1.78233 1.95844 0.61114 73 t - - -
240 1.38629 1.38629 1.38629 1.38629
241 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
242 74 0.56139 2.08489 1.86185 1.89791 74 a - - -
243 1.38629 1.38629 1.38629 1.38629
244 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
245 75 0.56139 2.08489 1.86185 1.89791 75 a - - -
246 1.38629 1.38629 1.38629 1.38629
247 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
248 76 1.97267 2.25870 0.46443 2.05625 76 g - - -
249 1.38629 1.38629 1.38629 1.38629
250 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
251 77 0.56139 2.08489 1.86185 1.89791 77 a - - -
252 1.38629 1.38629 1.38629 1.38629
253 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
254 78 1.98342 0.60779 2.04641 1.66785 78 c - - -
255 1.38629 1.38629 1.38629 1.38629
256 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
257 79 1.91091 1.78233 1.95844 0.61114 79 t - - -
258 1.38629 1.38629 1.38629 1.38629
259 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
260 80 0.56139 2.08489 1.86185 1.89791 80 a - - -
261 1.38629 1.38629 1.38629 1.38629
262 0.03279 3.43399 * 1.46634 0.26236 0.00000 *
263 //