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comparison test-data/files/input.merge.3.fas @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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-1:000000000000 0:9a3a2e04f47a
1 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1
2 ---------------------------------TTATCAGAAGG----------------
3 AGCCACCCCACAAGATTTAAAC--ACCATGCTACACCC-------AGTGGGGGGACATCA
4 AGCAGCCA--
5 >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1
6 -----------------------GTTTTCAGCATTATCAGAAGG----------------
7 AGCCACCCCACAAGATTTAAAC--ACCATGCTAAACAC-------AGTGGGGGGACAT--
8 ----------
9 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1
10 -------CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGG----------------
11 AGCCACCCCACAAGATTTAAAC--ACCATGCTAAA-------------------------
12 ----------
13 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1
14 -------TGT-------------AACACCTCAGTCATTA------CACAGGCCTGTCCAA
15 AGGTATCCTTTGAGCCAATTCC--CATACATTATTGTG----------------------
16 ----------
17 >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1
18 -------ATG-------------TATG---------------------GGAATTGGCTGA
19 AAGGATACCTTTGGACAGGCCT--GAGTAATGACTGAGGTGTTACAA---------CTTG
20 TC--------
21 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1
22 -------AA--------------GCTTGTGTAATTGTTAATTTC---TCTGTCCCACTCC
23 ATCCAGGTCGTGTGATTCCAAC--TCTGTTCCAG--------------------------
24 AG--------
25 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1
26 -------AA--------------AATTTCAAA----------------------------
27 AATTGGGCCTGAAAATCCATAC--AATACTCCAGTATT-TGCCATAAAGAAAAAAGACAG
28 TA--------
29 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1
30 -------GC--------------CTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAG
31 AGTGGAGGTTTGAGAGCCACCT--AGCAATTCA---------------------------
32 ----------
33 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1
34 -------GTA-------------CTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCAC
35 CATTATCGTTTGAGACCCACCT--CCCAACCC----------------------------
36 ----------
37 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1
38 -----------------------------GGT----------------------------
39 GATATGGGCTGATGTACCATTT--GCCCCTGGATGTTC-TGCACTATAGGGTAATTTTGG
40 CTGACCTGAT
41 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1
42 -------ATAGAG----------CTTCCTTTAGTTGCCCCCCTATCTTTATTGTGACGAG
43 GGGACGTTGCCAAAGAGTGACC--TG--------------------------AGG-----
44 ----------
45 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1
46 -------------------------------------------TTTTTCAGTTCGCTTAG
47 ATGAAGACTTCAGGCAGTATAC--TGCATTTACCATACCTAGTATAAACAATGAG-----
48 ----------
49 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1
50 ATAACCACAGAA-----------------AGCATAGTAATATGG----------------
51 GGAAAGACTCCTAAATTTAAACTGCCCATACAAAA---------------GGAAACAT--
52 ----------
53 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1
54 ---------------GACCAGCAAAGCACCTCTGGAAAGGTGAAGGGGCAGTAGTAATAC
55 AAGATAATAGTGACATAAAAGTAGT-----------------------------------
56 ----------------------
57 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1
58 ---------------------------------GGAAAGGTGAAGGGGCAGTAGTAATAC
59 AAGATAATAGTGACATAACAGTAGTG----------------------------------
60 -----CGAAGAAGAAAAGCAAA
61 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1
62 --------------------------------------TTTTATGGTTCATAATCCACTC
63 CATGTACTGGTTCTTTTAGAATCTCTCATTTTTCT--GCCCGTTCTAGCT----------
64 ----------------------
65 >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1
66 -------------GAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAATAACC
67 AGTACATGGAGTGTATTATGACC-------------------------------------
68 ----------------------
69 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1
70 ---------------------------------------------CTCTAGTGTCCATTC
71 ATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTCCATCTCTCCT-----
72 ----------------------
73 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1
74 TGATTTGTTGTGTCAGTTAGGGTGACAACT--------TTTTGTGTTCCTCTATTAGTAA
75 CATATCCTGCTTTTCCTA------------------------------------------
76 ----------------------
77 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1
78 ----------------------------------GAAGTCTTGAGTTCTCTTATTAA---
79 ---------GTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTC----
80 ----------------------
81 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1
82 ------------------------------------------------------------
83 ----------TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTCTTT-
84 -ATGGCAAATACTGGAGTATTG
85 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1
86 ---------------GGGGGGAACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACA
87 GACATACAAACTAAAGAATTACAA------------------------------------
88 ---------------------A
89 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1
90 ------------------------------------------------------------
91 ------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTCATCCTGTCTC
92 CTTGCCACACAATCATCACCTG