comparison test-data/files/clsReps.fas @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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-1:000000000000 0:9a3a2e04f47a
1 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1_1_0
2 CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACA
3 CCATGCTAAA
4 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1_2_1
5 GAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCA
6 ATCAAATCAG
7 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1_3_2
8 ATCCTCATGCATCTGTTCTACCATGTCATTTTTCCACATGTTAAAATTTTCTGTCACATT
9 TACCAATACT
10 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1_1_3
11 CTATGTTTACTTCTAATCCCGAATCCTGCAAAGCTAGATAAATTGCTTGTAACTCAGTCT
12 TCTGATTTGT
13 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1_2_4
14 CCAAGTATCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAATCCTAGG
15 AAAATGTCTA
16 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1_1_5
17 CTACTATTGCTACTAATGGTATAGGTTGCGTTACATGTACTACTTACTGCTTTGATAGAG
18 AAGCTTGATG
19 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1_1_6
20 TCTTTGCCTTGGTTGGAGCAACTCCTAATGGTTGAATTTTTACTACTTTATATTTATATA
21 ATTCCCTTCT
22 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1_1_7
23 AATAGCAATTTGTACAAGCAGTTTTAGGCTGACTTCGTGGATGCTTCCAGGGCTCTCGTC
24 TAGGATCAAC
25 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1_2_8
26 ACAACGGAATTGGAGGAAATGAACCAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAG
27 TACTATTTTT
28 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1_1_9
29 AGGATTTTACATAATTGCCTTACTTAAATCCCTGGGTAAATCTGACTTGCCCAATTCAAT
30 TTCCCCACTA
31 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1_2_10
32 TTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTACACCCAGTGGGGGGACAT
33 CAAGCAGCCA
34 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1_2_11
35 CTACCTCTTCTTCTGCTAGACTGCCATTTAACAGCAGTTGAGTTGATACTACTGGCCTAA
36 TTCCATGTGT
37 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1_1_12
38 TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTCTTTATGGCAAATAC
39 TGGAGTATTG
40 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1_1_13
41 TGCCAAGGATCCGTTCACTAATCGAATGGATCTGTCTCTGTCTCTCTCTCCACCTTCTTC
42 TTCTATTCCT
43 >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1_1_14
44 CAGGATTAACTGCGAATCTTTCTAGCTCCCTTGTTGCCCATACTATATGTTTTAATTTAT
45 ATTTTTTCTT
46 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1_1_15
47 GCTGCTCCCACCCTATCTTGTGCTGGCTCAGCTCGTCTCATTGTTTCCCTTACAGTAGGC
48 CATCCAATCA
49 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1_2_16
50 ACAGTAGAAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATCTGGGTCCCCTCCT
51 GAGGATTGGT
52 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1_1_17
53 AGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGAT
54 TAGAACATGG
55 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1_1_18
56 GATCCTGCATATAAGCAGCAGCTTTTTGCCTTTACTGGTTCTCTCTGGTTAGACCAGATC
57 TGAGCCTGGG
58 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1_1_19
59 GTACTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCACCATTATCGTTTGAGACCCAC
60 CTCCCAACCC
61 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1_2_20
62 CAGAGGAGGTCTCTCGACGCAGGACTCGGCTTGCTGAAGGGCGCACGGCAAGAGGCGAGG
63 GGCGGCGACT
64 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1_1_21
65 GTCTGGGGCATCAAGCAGCTCCAGGCAAGAATGCTGGCTGTGGAAAGATACCTAAAGGAT
66 CAACAGCTCC
67 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1_1_22
68 TTTTTCAGTTCGCTTAGATGAAGACTTCAGGCAGTATACTGCATTTACCATACCTAGTAT
69 AAACAATGAG
70 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1_1_23
71 ACAGCGACGAAGAGCTCATCAGAACAGACAGACTCATCAAGCTTCTCTATCAAAGCAGTA
72 AGTATTACAT
73 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1_1_24
74 GGGGGGAACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAA
75 GAATTACAAA
76 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1_1_25
77 TGCTCTGAAGAAAATTCCCTGGCCTTCCCTTGTAGTAAGGCCATATCTTCCCTAAAAAAT
78 TAGCCTGTCT
79 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1_1_26
80 GGCTAATTCACTCCCAACGAAGACAAGATATCCTTGATCTGTGGATGTACCACCCACAAG
81 GCTACTTCCC
82 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1_1_27
83 TGATTTGTTGTGTCAGTTAGGGTGACAACTTTTTGTGTTCCTCTATTAGTAACATATCCT
84 GCTTTTCCTA
85 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1_1_28
86 TAACGCCACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAACAAGCCCCAGA
87 AGACGAAGGG
88 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1_2_29
89 GTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCT
90 GGGACGATCT
91 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1_1_30
92 TTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTA
93 ACAGTACTGG
94 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1_1_31
95 CTCTAGTGTCCATTCATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTC
96 CATCTCTCCT
97 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1_1_32
98 AGCCATTGCTCTCCAATTACTGTGATATTTCTCATGTTCATCTTGGGCCTTAACTATTCC
99 ATCTAAAAAT
100 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1_1_33
101 TGCTGCTGGCTCAGCTCGTCTCATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA
102 TATTGACCAC
103 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1_1_34
104 TCGGAGTCATTGTTGCTATTACCACCATCTTTTGTTCATAGCAGCCCTGTAATATTTGAT
105 TAACATCTAA
106 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1_1_35
107 ATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAA
108 AAGGAAACAT
109 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1_1_36
110 TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTCATCCTGTCTCCTTGCCACACAA
111 TCATCACCTG
112 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1_1_37
113 ACCCATCTTATAGCAAAATCCTTTCCAAGCCCTGTCTTATTCTTCTAGGTATGTGGCGAA
114 TAGCTCTACA
115 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1_2_38
116 GAGGGGGAGTTGTTGTCTGTACCCCAGACCTGAAGCTCTCTTCTTGTGGGGCTGTTGGCT
117 CTGGTCTGCT
118 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1_2_39
119 TATAAAGACGCAGAAGTTATTCCAGCATACACAGGGCAGGAAACAGCATATTTTCTTTTC
120 AAATTAGCAG
121 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1_2_40
122 TGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATA
123 CATTATTGTG
124 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1_1_41
125 GGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAACAGTAGTGCGAAGAA
126 GAAAAGCAAA
127 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1_1_42
128 AAGTGCAAGCAATCTGATTCACCCGATTTCTTCCAATTATGATGACAGGTGTAGGTCCTA
129 CTAATACAGT
130 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1_1_43
131 TATGGTACCAGTTAGAGAAAGAACCCCTAGTAGGAGCAGAAACCTTCTATGTAGATGGGG
132 CAGCTAACAG
133 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1_1_44
134 ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATA
135 TAGAAGCAGA
136 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1_1_45
137 TGACAGAAACCTAGTTGGTCCAAAATGCGAACCCAGATTGTAAGACAATTTTAAAAGCAT
138 TGGGACCAGC
139 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1_1_46
140 GGTGATATGGGCTGATGTACCATTTGCCCCTGGATGTTCTGCACTATAGGGTAATTTTGG
141 CTGACCTGAT
142 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1_1_47
143 GCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGAGAGCCACC
144 TAGCAATTCA
145 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1_1_48
146 TCCTGACTCCAATACTGTAGGAGATTCCACCAATATTTGAGGGCTTCCCACCCCCTGCGT
147 CCCAGAAGTT
148 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1_1_49
149 ATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGA
150 GTAGGATGAC
151 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1_1_50
152 CAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTT
153 GAGTGGTCCA
154 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1_2_51
155 CACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGAT
156 ATCCTTGATC
157 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1_1_52
158 CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAGTTAGCCAG
159 AGAGCTCCCA
160 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1_1_53
161 ACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAA
162 TAGTAGCCCG
163 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1_1_54
164 AATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGC
165 CCACACTAAT
166 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1_1_55
167 TTAAAATTTTCTGTCACATTTACCAATACTACTTCTTGTGGGTTGGGGTCTGTGGGTACA
168 CAGGCATGTG
169 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1_1_56
170 TCCAAGCCCTGTCTTATTCTTCTAGGTATGTGGCGCATAGCTCTACAAGCTCCTTGTACT
171 ACTTCAATAA
172 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1_1_57
173 TGTGTTCAGCTGTACTATTATGGTTATAGCATTTTCCGTGAAATTGACAGATCTAATTAC
174 TACCTCTTCT
175 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1_1_58
176 GATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAAAAAGTTCAGAAGTACACA
177 TCCCACTAGG
178 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1_1_59
179 TCCTCTGTCGAGTAACGCCTATTCTGCTATGACGACACCCAATTCTGAAACTGGATAAAC
180 AGCAGTTGTT
181 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1_1_60
182 AGTTCATGTATCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGGCTGA
183 AACAGCATAT
184 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1_1_61
185 GGAGCTAGAACGATTCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACA
186 AATACTGGGA
187 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1_1_62
188 AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAA
189 AAAGACAGTA
190 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1_1_63
191 AGTAAGTAGTACCTGTAACGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAG
192 CACTAATAAT
193 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1_2_64
194 CGAGCAAGCTTCACAGGAGTTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGC
195 GAACCCAGAT
196 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1_1_65
197 GACCAGCAAAGCACCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACA
198 TAAAAGTAGT
199 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1_1_66
200 CCCCATATTACTATGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTACA
201 TCATTAGTGT
202 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1_1_67
203 CGGGCACACACTACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTC
204 CCTAGTTAGC
205 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1_1_68
206 CACCCATCCAAAGGAATTGAGGTTCTTTCTGATGTTTTTTGTCTGGTGTGGTAAGTCCCC
207 ACCTCGACAG
208 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1_2_69
209 TTTTATGGTTCATAATCCACTCCATGTACTGGTTCTTTTAGAATCTCTCATTTTTCTGCC
210 CGTTCTAGCT
211 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1_1_70
212 CTTTATATTTTTTCTTACCCCCTGGCCTTAACCGAATTTTTTCCCATCGATCTAATTCTC
213 CCCCGCTTAA
214 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1_1_71
215 TAGGAACCAAAGAAAGATAGTTAAGTGTTTCAATTGTGGCACAGAAGGGCACACAGCCAG
216 AAATTGCAGG
217 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1_1_72
218 TCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTCTTATGTCCAGAATGCTGGTAGGG
219 CTATACATTC
220 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1_1_73
221 ATAGAGCTTCCTTTAGTTGCCCCCCTATCTTTATTGTGACGAGGGGACGTTGCCAAAGAG
222 TGACCTGAGG
223 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1_1_74
224 GAAGTCTTGAGTTCTCTTATTAAGTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACT
225 GTCTTTTTTC
226 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1_1_75
227 TTTGATTGACTAACTCTGATTCACTTTGATCTTGTAGTGCTTGAATGATTCCTAATGCAT
228 ATTGTGAGTC
229 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1_1_76
230 ACTTTATATTTATATAATTCACTTCTCCAATTGTCCCTCATCTCTCCTCCTCCAGGTCTG
231 AAGATCTCGG
232 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1_1_77
233 AGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGTAGCCAGTAGATCCTAGACT
234 ATAGCCCTGG
235 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1_1_78
236 CTTCTTCTGTTAGTGGTATTACTTCTGTTAGTGCTTTGGTACCTCTAAGGAGTTTACATA
237 ATTGCCTTAC
238 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1_1_79
239 AAGCTTGTGTAATTGTTAATTTCTCTGTCCCACTCCATCCAGGTCGTGTGATTCCAACTC
240 TGTTCCAGAG
241 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1_1_80
242 TCCCTGTTCGGGCGCCACTGCTAGAGATTTTCCACACTGACTAAAAGGGTCTGAGGGATC
243 TCTAGTTACC
244 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1_1_81
245 GCCACAGAGGGAGCCACACAATGAATGGACACTATAGCTTTTAGAGGAGCTTAAGAATGA
246 AGCTGTTAGA
247 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1_1_82
248 CAGATACCTAAATGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTG
249 CACCCCTGCT
250 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1_1_83
251 AATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGCAGGAAGCAACCACCACTCTAT
252 TTTGTGCATC