Mercurial > repos > dave > pipelign
comparison test-data/files/clsReps.aln @ 0:9a3a2e04f47a draft default tip
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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1_1_0 | |
| 2 --------------------------CAGAAGTGATACCCATGTTTTCAG---------- | |
| 3 ---------------------CATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCA | |
| 4 TGCTAAA----------------------------------------------------- | |
| 5 ------------------------------------------------------------ | |
| 6 ------------------------------------------------------------ | |
| 7 ----- | |
| 8 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1_2_1 | |
| 9 ------------------------------------------------------------ | |
| 10 ------------------------------------------------------------ | |
| 11 ------------------------------------------------------GAAGA- | |
| 12 ---------------AGCGGAGACAGCGACGAAGAGCTCA-------------------- | |
| 13 -------------TCAGAACAGTCAGACTCATCAAGCTTCTCAATCAAATCAG------- | |
| 14 ----- | |
| 15 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1_3_2 | |
| 16 AT---C--CTCATGCATCTGTTCTACCATGTCATTTTTCCA------------------- | |
| 17 --------------------------------------CATGTTAAAATTTTCTGTCACA | |
| 18 TTTACCAATACT------------------------------------------------ | |
| 19 ------------------------------------------------------------ | |
| 20 ------------------------------------------------------------ | |
| 21 ----- | |
| 22 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1_1_3 | |
| 23 ----------------------------------------------CTATGTTTACTTCT | |
| 24 A----------------------ATCCCGAATCCTGCAAAGCTAGATAAATTGCTTGTAA | |
| 25 CTCAGTCTTCTGATTTGT------------------------------------------ | |
| 26 ------------------------------------------------------------ | |
| 27 ------------------------------------------------------------ | |
| 28 ----- | |
| 29 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1_2_4 | |
| 30 ------------------------------------------------------------ | |
| 31 ----------------------CCAAGTATCCCCATAAGTTTCATAGATATGATGCCCTA | |
| 32 AGCCATGGAGCCAAATCCTAGGAAAATGT------------------------------- | |
| 33 ------------------------------------------------------------ | |
| 34 ------------------------------------------------------------ | |
| 35 --CTA | |
| 36 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1_1_5 | |
| 37 -------------------------------------CTACTATTGCTACTAATGGTA-- | |
| 38 --------------------------------TAGGTTGCGTTACATGTAC-------TA | |
| 39 CTTACTGCTTTGAT--------------------------AGAGAAGCTTGATG------ | |
| 40 ------------------------------------------------------------ | |
| 41 ------------------------------------------------------------ | |
| 42 ----- | |
| 43 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1_1_6 | |
| 44 ----------------------------------TCTTTGCCTTGGTTGGAGCAACTCCT | |
| 45 AA------------------------------TGGTTGAATTTTTACTACTTTATATTTA | |
| 46 TATAATTCCCTTCT---------------------------------------------- | |
| 47 ------------------------------------------------------------ | |
| 48 ------------------------------------------------------------ | |
| 49 ----- | |
| 50 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1_1_7 | |
| 51 AATAGCAATTTGTACAAGCAGTTTTAGGCTGACTTCGTGGATGCTTCCAGGGCTCTCGTC | |
| 52 TAGGATCAAC-------------------------------------------------- | |
| 53 ------------------------------------------------------------ | |
| 54 ------------------------------------------------------------ | |
| 55 ------------------------------------------------------------ | |
| 56 ----- | |
| 57 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1_2_8 | |
| 58 ------------------------------------------------------------ | |
| 59 ------------------------------------------------------------ | |
| 60 ------------------------------------------ACAACGGAATTGGAGGA- | |
| 61 -------------------AATGAACCAGTAGATAAATTA-------------------- | |
| 62 GTCAGTGCTGGAATCAGGAAAGTACTATTTTT---------------------------- | |
| 63 ----- | |
| 64 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1_1_9 | |
| 65 ------------------------------------------------------------ | |
| 66 --------------------------------------------AGGATTT-------TA | |
| 67 CATAATTGCCTTAC--------------------------TTAAATCCCTGGGTAAATCT | |
| 68 GACTTGCCCAA-TTCAATTTCCCCACTA-------------------------------- | |
| 69 ------------------------------------------------------------ | |
| 70 ----- | |
| 71 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1_2_10 | |
| 72 ------------------------------------------------------------ | |
| 73 -----------------------TTATCAGAAGGAGCCACCCCACAAGATTTAAACACCA | |
| 74 TGCTACACCC-------------------------------------------------- | |
| 75 -------------------AGTGGGGGGACATCAAGCAGCCA------------------ | |
| 76 ------------------------------------------------------------ | |
| 77 ----- | |
| 78 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1_2_11 | |
| 79 -------------------------------CTACCTCTTCTTCTGCTAGACTGCCATTT | |
| 80 AACA----------------------GCAGTTGAGTTGATACTACTGGCCT-------AA | |
| 81 TTCCATGTGT-------------------------------------------------- | |
| 82 ------------------------------------------------------------ | |
| 83 ------------------------------------------------------------ | |
| 84 ----- | |
| 85 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1_1_12 | |
| 86 ------------------------------------------------------------ | |
| 87 ---------------------TTCTCTGAAATCTACTAATTTTCTCCATTT-------AG | |
| 88 TACTGTCTTTTTTCTTTATGGCAAATACTGGAGTAT------------------------ | |
| 89 ------------------------------------------------------------ | |
| 90 ------------------------------------------------------------ | |
| 91 ---TG | |
| 92 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1_1_13 | |
| 93 --------------------------------------------TGCCAAGGATCCGTTC | |
| 94 ACT--------------------------AATCGAATGGATCTGTCTCTGTCTCTCTCTC | |
| 95 CACCTTCTTCTTCTATTCCT---------------------------------------- | |
| 96 ------------------------------------------------------------ | |
| 97 ------------------------------------------------------------ | |
| 98 ----- | |
| 99 >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1_1_14 | |
| 100 -------------------------CAGGATTAACTGCGAATCTTTCTAGCTCCCTTGTT | |
| 101 GC----------------------------------CCATACTATATGTTT-------TA | |
| 102 ATTTATATTTTTTCTT-------------------------------------------- | |
| 103 ------------------------------------------------------------ | |
| 104 ------------------------------------------------------------ | |
| 105 ----- | |
| 106 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1_1_15 | |
| 107 ---------------------------------------------GCTGCTCCCACCCT- | |
| 108 ------------------------ATCTTGTGCTGGCTCAGCTCGTCTCATTGTTTCCCT | |
| 109 TACAGTAGGCCATCCAATCA---------------------------------------- | |
| 110 ------------------------------------------------------------ | |
| 111 ------------------------------------------------------------ | |
| 112 ----- | |
| 113 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1_2_16 | |
| 114 ------------------------------------------------------------ | |
| 115 --------------------------------------------------------ACAG | |
| 116 TAGAAAAATTCCCCTCCACCA------------------TTAAAACTGTGGTTACAATAT | |
| 117 CTGGGTCCCC---------TCCTGAGGATTGGT--------------------------- | |
| 118 ------------------------------------------------------------ | |
| 119 ----- | |
| 120 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1_1_17 | |
| 121 ------------------------------------------------------------ | |
| 122 ------------------------------------------------------------ | |
| 123 ------------------------------------------------------------ | |
| 124 --------------AGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAATTA | |
| 125 GACAGGATGAGGATTAGAACA--------------------------------------- | |
| 126 --TGG | |
| 127 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1_1_18 | |
| 128 ------------------------------------------------------------ | |
| 129 ----------------------------------------GATCCTGCATA-------TA | |
| 130 AGCAGCAGCTTTTT------------------------------------------GCCT | |
| 131 TTACTGGTTCT-CTCTGGTTAGACCAGATCTGA-GCCTGGG------------------- | |
| 132 ------------------------------------------------------------ | |
| 133 ----- | |
| 134 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1_1_19 | |
| 135 ----------GTACTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCACCATTATCG-- | |
| 136 -------------------------------------------------TTTGAGACCCA | |
| 137 CCTCCCAACCC------------------------------------------------- | |
| 138 ------------------------------------------------------------ | |
| 139 ------------------------------------------------------------ | |
| 140 ----- | |
| 141 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1_2_20 | |
| 142 ------------------------------------------------------------ | |
| 143 ------------------------------------------------------------ | |
| 144 -----------------------------------CAGAGGAGGTCTCTCGACGCAGGAC | |
| 145 TCGGCTTGCTG-----AAGGGCGCACGGCAAGAGGCGAGGGGCGGCGA------------ | |
| 146 ------------------------------------------------------------ | |
| 147 ---CT | |
| 148 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1_1_21 | |
| 149 ------------------------------------GTCTGGGGCATCAAGCAGCTCCAG | |
| 150 GC--------------------------AAGAATGCTGGCTGTGGAAAGATACCTAAAGG | |
| 151 ATCAACAGCTCC------------------------------------------------ | |
| 152 ------------------------------------------------------------ | |
| 153 ------------------------------------------------------------ | |
| 154 ----- | |
| 155 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1_1_22 | |
| 156 ------------------------------------------TTTTTCAG---------- | |
| 157 --------------------------------TTCGCTTAGATGAAGACTTCAGGCAGTA | |
| 158 TACTGCATTTACCATAC------------------------------------------- | |
| 159 -------------------CTAGTATAAACAATGAG------------------------ | |
| 160 ------------------------------------------------------------ | |
| 161 ----- | |
| 162 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1_1_23 | |
| 163 ------------------------------------------------------------ | |
| 164 ------------------------------------------------------------ | |
| 165 ------------------------------------------------------------ | |
| 166 ----------------------ACAGCGACGAAGAGCTCA-------------------- | |
| 167 -------------TCAGAACAGACAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAT | |
| 168 TACAT | |
| 169 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1_1_24 | |
| 170 GGGGGG------------------------------------------------------ | |
| 171 ------------------------------------------------------------ | |
| 172 ------------------------------------------------------------ | |
| 173 ----------------AACAGTGCAGGGGAAAGAATAGTA------------------GA | |
| 174 CATAATAGCAACAGACATACAAACTAAAGAATTACAA----------------------- | |
| 175 ----A | |
| 176 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1_1_25 | |
| 177 ------------------------------------------------------------ | |
| 178 ----------------------------------------------TGCTCTGAAGAAAA | |
| 179 TTCCCTGGCCTTCCCTTGTAGTAAGGC-CATAT-CTTCCCTAAAAAATTAGCCTGTCT-- | |
| 180 ------------------------------------------------------------ | |
| 181 ------------------------------------------------------------ | |
| 182 ----- | |
| 183 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1_1_26 | |
| 184 ------------------------------------------------------------ | |
| 185 ---------------------------------------GGCTAATTCACTCCCAACGAA | |
| 186 GACAAGATATCCTTGATCT----------------------------------------- | |
| 187 ----------------GTGGATGTACCACCCACAAGGCTACTTCCC-------------- | |
| 188 ------------------------------------------------------------ | |
| 189 ----- | |
| 190 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1_1_27 | |
| 191 ----------------------------------TGATTTGTTGTGTCAG---------- | |
| 192 --------------------TTAGGGTGACAACTTTTTGTGTTCCTCTATT-------AG | |
| 193 TAACATATCCTGCTTTTCCTA--------------------------------------- | |
| 194 ------------------------------------------------------------ | |
| 195 ------------------------------------------------------------ | |
| 196 ----- | |
| 197 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1_1_28 | |
| 198 ------------------------------------------------------------ | |
| 199 ---------------------------------------------------------TAA | |
| 200 CGCCACCTTTGCCTAGTGTTACGAAAC--------------------------------- | |
| 201 -------------------TGCCAGAGGATAGATGGAACAA-----------------G- | |
| 202 -----CCCCAGAAGACGAAGGG-------------------------------------- | |
| 203 ----- | |
| 204 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1_2_29 | |
| 205 ------------------------------------------------------------ | |
| 206 -----------------GTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGG | |
| 207 ATCCTTGGCACTTATCTGGGACGATCT--------------------------------- | |
| 208 ------------------------------------------------------------ | |
| 209 ------------------------------------------------------------ | |
| 210 ----- | |
| 211 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1_1_30 | |
| 212 ------------------------------------------------------------ | |
| 213 -------------------------------TTCTGGGAAGTT----------------- | |
| 214 ------------------------------------------------------------ | |
| 215 -------------------CAATTAGGAATACCACATCCC-------------------- | |
| 216 -------GCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGG---------------- | |
| 217 ----- | |
| 218 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1_1_31 | |
| 219 ------------------------------CTCTAGTGTCCATTCATTGTGTGGCTCCCT | |
| 220 CT--------------------------GTGGCCCTTGGTCTTCTTGGGCT-------TG | |
| 221 TTCCATCTCTCC------------------------------------------------ | |
| 222 ---------------------------------T-------------------------- | |
| 223 ------------------------------------------------------------ | |
| 224 ----- | |
| 225 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1_1_32 | |
| 226 ------------------------------------------------------------ | |
| 227 -------------A--------------------GCCATTGCTCTCCAATT-------AC | |
| 228 TGTGATATTTCTCATGTTCATCTTGG----------GCCTTAACTATTCCATCTAAAAAT | |
| 229 ------------------------------------------------------------ | |
| 230 ------------------------------------------------------------ | |
| 231 ----- | |
| 232 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1_1_33 | |
| 233 ------------------------------------------------------------ | |
| 234 ---------------------------TGCTGCTGGCTCAGCTCGTCTCATTCATTCCCT | |
| 235 TACAGTAGGCCATCCAATCAC---------------ACTACATATTGACCAC-------- | |
| 236 ------------------------------------------------------------ | |
| 237 ------------------------------------------------------------ | |
| 238 ----- | |
| 239 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1_1_34 | |
| 240 -------------------------TCGGAGTCATTGTTGCTATTACCACCATCTTTTGT | |
| 241 TC------------------------------ATAGCAGCCCTGTAATATTTGATTAACA | |
| 242 TCTAA------------------------------------------------------- | |
| 243 ------------------------------------------------------------ | |
| 244 ------------------------------------------------------------ | |
| 245 ----- | |
| 246 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1_1_35 | |
| 247 ------------------------------------------------------------ | |
| 248 ------------------------------------------------------------ | |
| 249 ------------------------------------------------------------ | |
| 250 ----------------------ATAACCACAGAAAGCATA-------------------- | |
| 251 -------GTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACAT- | |
| 252 ----- | |
| 253 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1_1_36 | |
| 254 ------------------------------------------------------------ | |
| 255 --------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCT-------CA | |
| 256 TCCTGTCTCCTTGCCACACAATCATCACCTG----------------------------- | |
| 257 ------------------------------------------------------------ | |
| 258 ------------------------------------------------------------ | |
| 259 ----- | |
| 260 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1_1_37 | |
| 261 ACCCAT--CTTATAGCAAAATCCTTTCCAAGCCCTGTCTTATTCTTCTAGGTATGTGG-- | |
| 262 --------------------------------CGAATAGCTCTACA-------------- | |
| 263 ------------------------------------------------------------ | |
| 264 ------------------------------------------------------------ | |
| 265 ------------------------------------------------------------ | |
| 266 ----- | |
| 267 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1_2_38 | |
| 268 ----------------------------------GAGGGGGAGTTGTTGTCTGTACCCCA | |
| 269 GACCTG-------AAGCTCTCTTCTTGTGGGGCTGTTGGCTCTGGTCTGCT--------- | |
| 270 ------------------------------------------------------------ | |
| 271 ------------------------------------------------------------ | |
| 272 ------------------------------------------------------------ | |
| 273 ----- | |
| 274 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1_2_39 | |
| 275 ------------------------------------------------------------ | |
| 276 ------------------------------------------------------------ | |
| 277 ------------------------------------------------------------ | |
| 278 -------------------TATAAAGACGCAGAAGTTATT-------------------- | |
| 279 -------CCAGCATACACAGGGCAGGAAACAGCATATTTTCTTTTCAAATTAGCAG---- | |
| 280 ----- | |
| 281 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1_2_40 | |
| 282 ----------------TGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCC-- | |
| 283 -------------------------------------------------TTTGAGCCAAT | |
| 284 TCCCATACATTATTGTG------------------------------------------- | |
| 285 ------------------------------------------------------------ | |
| 286 ------------------------------------------------------------ | |
| 287 ----- | |
| 288 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1_1_41 | |
| 289 ------------------------------------------------------------ | |
| 290 ------------------------------------------------------------ | |
| 291 ------------------------------------------------------GGAAA- | |
| 292 -------------------GGTGAAGGGGCAGTAGTAATAC-----------------AA | |
| 293 GATAATAGTGACATAACAGTAGTGCGAAGAAGAAAAGCAAA------------------- | |
| 294 ----- | |
| 295 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1_1_42 | |
| 296 ------------------------------------------------------------ | |
| 297 --------------------------------AAGTGCAAGCAATCTGATT-------CA | |
| 298 CCCGATTTCTTCCAATTATGA--------------------------------------- | |
| 299 --------------TGACAGGTGTAGGTCCTACTAATACAGT------------------ | |
| 300 ------------------------------------------------------------ | |
| 301 ----- | |
| 302 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1_1_43 | |
| 303 ------------------------------------------------------------ | |
| 304 ------------------------------------------------------------ | |
| 305 ----------------------------------------TATGGTACCAGTTAGAGAA- | |
| 306 ---------------AGAACCCCTAGTAGGAGCAGAAACCT------------------- | |
| 307 -------TCTATGTAGATGGGGCAGCTAACAG---------------------------- | |
| 308 ----- | |
| 309 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1_1_44 | |
| 310 ------------------------------------------------------------ | |
| 311 --------------------------------------ATTGTACACATTT-------AG | |
| 312 AATGAAAAGTTATCCTGGTAG------------------CAGTTCATGTAGCCAGTGGA- | |
| 313 -------------------TATATAGAAGCAGA--------------------------- | |
| 314 ------------------------------------------------------------ | |
| 315 ----- | |
| 316 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1_1_45 | |
| 317 ------------------------------------------------------------ | |
| 318 ----------------------------------------------------------TG | |
| 319 ACAGAAACCT------------------------------AGTTGGTCCAAAATGCGAAC | |
| 320 CCAGATTGTAA----GACAATTTTAAAAGCATTGGGACCA-------------------- | |
| 321 -------GC--------------------------------------------------- | |
| 322 ----- | |
| 323 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1_1_46 | |
| 324 ------------------------------------------------------------ | |
| 325 ------------------------------------------------------------ | |
| 326 -----------------------------------------GGTGATATGGGCTGATGTA | |
| 327 CCATTTGCCCC----TGGATGTTCTGCACTATAGGGTAATT-----------------TT | |
| 328 GGCTGACCTGAT------------------------------------------------ | |
| 329 ----- | |
| 330 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1_1_47 | |
| 331 -----------GCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGG-- | |
| 332 -------------------------------------------------TTTGAGAGCCA | |
| 333 CCTAGCAATTCA------------------------------------------------ | |
| 334 ------------------------------------------------------------ | |
| 335 ------------------------------------------------------------ | |
| 336 ----- | |
| 337 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1_1_48 | |
| 338 -------------------------------------------------------TCCTG | |
| 339 AC------------------------------TCCAATACTGTAGGAGATTCCACCAATA | |
| 340 TTTGAGGGCTTCCCACCCCCTGC------------------------------------- | |
| 341 -------------------GTCCCAGAAGTT----------------------------- | |
| 342 ------------------------------------------------------------ | |
| 343 ----- | |
| 344 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1_1_49 | |
| 345 ------------------------------------------------------------ | |
| 346 ------------------------------------------------------------ | |
| 347 ------------------------------------------------------------ | |
| 348 -------------------ATTTTAAAAGCATTGGGACCAGCGGCTACACTAG---AAGA | |
| 349 AATGATGACAGCATGTCAGGGAGTAGGATGAC---------------------------- | |
| 350 ----- | |
| 351 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1_1_50 | |
| 352 ------------------------------------------------------------ | |
| 353 ------------------------------------------------------------ | |
| 354 ------------------------------------------------------------ | |
| 355 ----------------CAACCTATACCAATAGTAGCAATA-------------------- | |
| 356 -------GTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGAGTGGTC--------- | |
| 357 ---CA | |
| 358 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1_2_51 | |
| 359 ------------------------------------------------------------ | |
| 360 --------CACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAA | |
| 361 GACAAGATATCCTTGATC------------------------------------------ | |
| 362 ------------------------------------------------------------ | |
| 363 ------------------------------------------------------------ | |
| 364 ----- | |
| 365 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1_1_52 | |
| 366 ------------------------------------------------------------ | |
| 367 -------------------------CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTA | |
| 368 ATCAGTGGGTTCCCTAGTTA----------------GCCAGAGAGCTCCCA--------- | |
| 369 ------------------------------------------------------------ | |
| 370 ------------------------------------------------------------ | |
| 371 ----- | |
| 372 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1_1_53 | |
| 373 ------------------------------------------------------------ | |
| 374 ------------------------------------------------------------ | |
| 375 ---------------------ACAGT---------AATTGGAGAGCAATGGCTAGTGATT | |
| 376 TTAACCTGCCA--------CCTGTAGTAGCAAAAGAAATAGTAGCCCG------------ | |
| 377 ------------------------------------------------------------ | |
| 378 ----- | |
| 379 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1_1_54 | |
| 380 ------------------------------------------------------------ | |
| 381 ------------------------------------------------------------ | |
| 382 -------AATTT----------------------------ATCAAGAGCCATTTAAAAAT | |
| 383 CTGAAAACAGG----AAAATATGCAAGAATGAGGGGTGCC-------------------- | |
| 384 CACACTAAT--------------------------------------------------- | |
| 385 ----- | |
| 386 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1_1_55 | |
| 387 ------------------------------------------------------------ | |
| 388 ------------------------------------------TTAAAATTTTCTGTCACA | |
| 389 TTTACCAATACTACTTCTTGTGGGTT---------------------------------- | |
| 390 ---------------GGGGTCTGTGGGTACACAGGCATGTG------------------- | |
| 391 ------------------------------------------------------------ | |
| 392 ----- | |
| 393 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1_1_56 | |
| 394 -------------------------TCCAAGCCCTGTCTTATTCTTCTAGGTATGTGG-- | |
| 395 --------------------------------CGCATAGCTCTACAAGCTC-------CT | |
| 396 TGTACTACTTCAATAA-------------------------------------------- | |
| 397 ------------------------------------------------------------ | |
| 398 ------------------------------------------------------------ | |
| 399 ----- | |
| 400 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1_1_57 | |
| 401 -----------------------------------------TGTGTTCAGCTGTACTATT | |
| 402 ATGGTT-----------------ATAGCATTTTCCGTGAAATTGACAGATCTAATTACTA | |
| 403 CCTCTTCT---------------------------------------------------- | |
| 404 ------------------------------------------------------------ | |
| 405 ------------------------------------------------------------ | |
| 406 ----- | |
| 407 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1_1_58 | |
| 408 ------------------------------------------------------------ | |
| 409 ------------------------------------------------------------ | |
| 410 ---GATGGTTTT----------------------------ATAGACATCACTATGAAAGC | |
| 411 CCTCATCCAAG----AAAAAGTTCAGAAGTA-------CA-------------------- | |
| 412 CATCCCACTAGG------------------------------------------------ | |
| 413 ----- | |
| 414 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1_1_59 | |
| 415 --------------------TCCTCTGTCGAGTAACGCCTATTCTGCTATGACGACACCC | |
| 416 A----------------------ATTCTGAAACTGGATAAACAGCAGTTGTT-------- | |
| 417 ------------------------------------------------------------ | |
| 418 ------------------------------------------------------------ | |
| 419 ------------------------------------------------------------ | |
| 420 ----- | |
| 421 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1_1_60 | |
| 422 ------------------------------------------------------------ | |
| 423 ------------------------------------------------------------ | |
| 424 ----------------------------------------AGTTCATGTATCCAGTGGA- | |
| 425 -------------------TATATAGAAGCAGAAGTTATT-------------------- | |
| 426 -------CCAGCAGAAACAGGGGCTGAAACAGCATAT----------------------- | |
| 427 ----- | |
| 428 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1_1_61 | |
| 429 ------------------------------------------------------------ | |
| 430 ---------------GGAGCTAGAACGATTCGCAGTTAATCCTGGCGTGTT--------- | |
| 431 ------------------------------------------------------------ | |
| 432 --------------AGAAACATCAGAAGGCTGTAGACAAATACTGGGA------------ | |
| 433 ------------------------------------------------------------ | |
| 434 ----- | |
| 435 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1_1_62 | |
| 436 ------------------------------------------------------------ | |
| 437 -----------------------AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATA | |
| 438 CTCCAGTATTTGCCATAAAGAAAAAAGACAGTA--------------------------- | |
| 439 ------------------------------------------------------------ | |
| 440 ------------------------------------------------------------ | |
| 441 ----- | |
| 442 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1_1_63 | |
| 443 ------------------------------------------------------------ | |
| 444 ------------------------------------------------------------ | |
| 445 ---AGTAAGT------------------------------AGTACCTGTAAC--GCAA-- | |
| 446 -------------------CCTATACCAATAGTAGCAATA-------------------- | |
| 447 -------GTAGCATTAGTAGTAGCACTAATAAT--------------------------- | |
| 448 ----- | |
| 449 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1_2_64 | |
| 450 ------------------------------------------------------------ | |
| 451 -----------------------------CG------------AGCAAGCTTCACAGGAG | |
| 452 TTAAAAAATTGGATGACAGAA---------------ACCTTGTTGGTCCAAAATGCGAAC | |
| 453 CCAGAT------------------------------------------------------ | |
| 454 ------------------------------------------------------------ | |
| 455 ----- | |
| 456 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1_1_65 | |
| 457 ------------------------------------------------------------ | |
| 458 ------------------------------------------------------------ | |
| 459 ------------------------------------GACCAGCAAAGCACCTCTGGAAA- | |
| 460 -------------------GGTGAAGGGGCAGTAGTAATAC-----------------AA | |
| 461 GATAATAGTGACATAAAAGTAGT------------------------------------- | |
| 462 ----- | |
| 463 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1_1_66 | |
| 464 C------------------------------------CCCATATTACTATGCTTTCTGTG | |
| 465 GT------------------------------------------TAATTTTTGCACTGCC | |
| 466 TCTGTTAATTGTTTTACATCATTAGTGT-------------------------------- | |
| 467 ------------------------------------------------------------ | |
| 468 ------------------------------------------------------------ | |
| 469 ----- | |
| 470 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1_1_67 | |
| 471 -----------------------------------------------CGGGCACACACT- | |
| 472 ------------------------ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTA | |
| 473 AGCAGTGGGTTCCCTAGTTA----------------GC---------------------- | |
| 474 ------------------------------------------------------------ | |
| 475 ------------------------------------------------------------ | |
| 476 ----- | |
| 477 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1_1_68 | |
| 478 ------------------------------------------------------------ | |
| 479 --------------CACCCATCCAAAGGAATTGAGGTTCTTTCTGATGTTTTTTGTCTGG | |
| 480 TGTGGTAAGTCCCCACCTCGACAG------------------------------------ | |
| 481 ------------------------------------------------------------ | |
| 482 ------------------------------------------------------------ | |
| 483 ----- | |
| 484 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1_2_69 | |
| 485 ------------------------------------------------------------ | |
| 486 ---------------TTTTATGGTTCATAATCCACTCCATGTACTGGTTCTTTTAGAATC | |
| 487 TCTCATTTTTCTGCCCGTTCTAG------------------------------------- | |
| 488 ------------------------------------------------------------ | |
| 489 ------------------------------------------------------------ | |
| 490 ---CT | |
| 491 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1_1_70 | |
| 492 --------------------------------------------CTTTATATTTTTTCTT | |
| 493 ACCCCC--------------------------TGGCCTTAACCGAATTTTTTCCCATCGA | |
| 494 TCTAATTCTCCCCCGCTTAA---------------------------------------- | |
| 495 ------------------------------------------------------------ | |
| 496 ------------------------------------------------------------ | |
| 497 ----- | |
| 498 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1_1_71 | |
| 499 ------------------------------------------------------------ | |
| 500 ------------------------------------------------------------ | |
| 501 -----------------------------TAG--GAACCAAAGAAAGATAGTTAAGTGTT | |
| 502 TCAATTGTGGC-ACAGAAGGGCACACAGCCAGAAATTGCAGG------------------ | |
| 503 ------------------------------------------------------------ | |
| 504 ----- | |
| 505 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1_1_72 | |
| 506 ----------------------------------TCTACATAGTCTCTAAAGGGTTCCTT | |
| 507 TGGTCCT-------TGTCTTATGTCCAGAATGCTGGTAGGGCTATACATTC--------- | |
| 508 ------------------------------------------------------------ | |
| 509 ------------------------------------------------------------ | |
| 510 ------------------------------------------------------------ | |
| 511 ----- | |
| 512 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1_1_73 | |
| 513 ----------------------------------ATAGAGCTTCCTTTAGTTGCCCCCCT | |
| 514 ATCTTTATTGTG-AC--------------------------------------------- | |
| 515 ------------------------------------------------------------ | |
| 516 ----------------GAGGGGACGTTGCCAAAGAGTGACCTGAGG-------------- | |
| 517 ------------------------------------------------------------ | |
| 518 ----- | |
| 519 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1_1_74 | |
| 520 G---------------------------AAGTCTTGAGTTCTCTTATTAA---------- | |
| 521 --------------------GTTCTCTGAAATCTACTAATTTTCTCCATTT-------AG | |
| 522 TACTGTCTTTTTTC---------------------------------------------- | |
| 523 ------------------------------------------------------------ | |
| 524 ------------------------------------------------------------ | |
| 525 ----- | |
| 526 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1_1_75 | |
| 527 TTTGA------------------------------------------------------- | |
| 528 -----T----------TGACTAACTCTGATTCACTTTGATCTTGTAGTGCTTGAATGATT | |
| 529 CCTAATGCATATTGTGAGTC---------------------------------------- | |
| 530 ------------------------------------------------------------ | |
| 531 ------------------------------------------------------------ | |
| 532 ----- | |
| 533 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1_1_76 | |
| 534 ------------------------------------------------------------ | |
| 535 --------------------------------------ACTTT---ATATT-------TA | |
| 536 TATAATTCACTTCTCCAATTGTCCCTCATCTCTCCT------------------------ | |
| 537 -----------CCTCCAGGTCTGAAGATCTCGG--------------------------- | |
| 538 ------------------------------------------------------------ | |
| 539 ----- | |
| 540 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1_1_77 | |
| 541 ------------------------------------------------------------ | |
| 542 ------------------AGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGTA | |
| 543 GCCAGTAGATCCTAGACTATAGCCCTGG-------------------------------- | |
| 544 ------------------------------------------------------------ | |
| 545 ------------------------------------------------------------ | |
| 546 ----- | |
| 547 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1_1_78 | |
| 548 -------------------------------------CTTCTTCTGTTAGTGGTATTACT | |
| 549 TCT--------------------GTTAGTGCTTTGGTACCTCTAAGGAGTT-------TA | |
| 550 CATAATTGCCTTAC---------------------------------------------- | |
| 551 ------------------------------------------------------------ | |
| 552 ------------------------------------------------------------ | |
| 553 ----- | |
| 554 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1_1_79 | |
| 555 ----------------------------------AAGCTTGTGTAATTGTTAATTTCTCT | |
| 556 GTCCCACT------------------------CCATCCAGGTCGTGTGATTCCAACTCTG | |
| 557 TTCCAGAG---------------------------------------------------- | |
| 558 ------------------------------------------------------------ | |
| 559 ------------------------------------------------------------ | |
| 560 ----- | |
| 561 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1_1_80 | |
| 562 ------------------------------------------------------------ | |
| 563 ---------------------TCCCTGTTCGGGCGCCACTGCTAGAGATTTTCCACACTG | |
| 564 ACTAA------------------------------------------------------- | |
| 565 --------------AAGGGTCTGAGGGATCTCTAGTTACC-------------------- | |
| 566 ------------------------------------------------------------ | |
| 567 ----- | |
| 568 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1_1_81 | |
| 569 ------------------------------------------------------------ | |
| 570 ----------GCCACAGAGGGAGCCACACAATGAATGGACACTATAGCTTTT-------- | |
| 571 ------------------------------------------------------------ | |
| 572 --------------AGAGGAGCTTAAGAATGAAGCTGTTAGA------------------ | |
| 573 ------------------------------------------------------------ | |
| 574 ----- | |
| 575 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1_1_82 | |
| 576 ------------------------------------------------------------ | |
| 577 ----------------------------------------------CAGATACCTAAATG | |
| 578 ATCAACAGCTCCTGGGGATTTGGGGT---------TGCTCTGGAAAACTCATTTGCACCC | |
| 579 CTGCT------------------------------------------------------- | |
| 580 ------------------------------------------------------------ | |
| 581 ----- | |
| 582 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1_1_83 | |
| 583 ------------------------------------------------------------ | |
| 584 --------------------AATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGCA | |
| 585 GGAAGCAACCACCACTCTATTTTGTGCATC------------------------------ | |
| 586 ------------------------------------------------------------ | |
| 587 ------------------------------------------------------------ | |
| 588 ----- |