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comparison test-data/files/NODE_51.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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-1:000000000000 0:9a3a2e04f47a
1 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
2 CGGGCACAC----------------------------ACT--------ACTTGAAGCACT
3 CAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTAG--TTAGC------------
4 -------------------------------------
5 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
6 -------------------------------------------------CTTGAAGCACT
7 CAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAG--TTAGCCAGA--------
8 ----------------------------GAGCTCCCA
9 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
10 ---------------------------------------------TGCTGCTGGCTCAGC
11 TCGTCT---CATTCATTCCCTTACAGTAGGCCATCCAATCACACTACATATT--------
12 -------------------------------GACCAC
13 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
14 GCTGCTCCC----------------------------ACCCTATCTTGTGCTGGCTCAGC
15 TCGTCT---CATTGTTTCCCTTACAGTAGGCCATCCAATCA-------------------
16 -------------------------------------
17 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
18 ------------------------------------------------TCCTCTGTCGAG
19 TAACGC---CTATTCTGCTATGACGACACCCAATTCTGAAA--CTGGATAAA--------
20 --------------------------CAGCAGTTGTT
21 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
22 ------------------------------------------------------------
23 --------------------TGCCAAGGATCCGTTCACTAA--TCGAATGGA-----TCT
24 GTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT
25 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
26 ------------------------------------------------TTCTGGGAAGTT
27 CAAT----------------TAGGAATACCACATCCCGCAGGGTTAAAAAAG-----AAA
28 AAATCAGT------------------AACAGTACTGG
29 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
30 ------------------------------------------------CTATG------T
31 TTAC----------------TTCTAATCCCGAATCCTGCAAAGCTAGATAAATTGCTTGT
32 AACTCAGTC-----------------TTCTGATTTGT
33 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
34 C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGA
35 CAAG----ATATCCTTGATC----------------------------------------
36 -------------------------------------
37 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
38 ------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTGCCAAAGAAGA
39 CAAG----ATATCCTTGATCTGAGGA----------------------------------
40 -------------------------------------
41 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
42 -------------------------------------GGCTAATTCACTCCCAACGAAGA
43 CAAG----ATATCCTTGATCTGTGGATGTACCACCCACAAG-------------------
44 ---------------------------GCTACTTCCC
45 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
46 ---------------------ACAACGGAATTGG---AGGAAATGAACCAGTAGATAAAT
47 TAGT----CAGTGCTGGAATCAGGAAAGTACTATTTTT----------------------
48 -------------------------------------
49 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
50 -----------------------AATAGTACTTT---CCTGATTCCAGCACTGACTAAAT
51 TATC----TACTTGTTCATTTCCTCCAATTCCTTTGTGTG--------------------
52 -------------------------------------
53 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
54 -----------------GAAGAAGCGGAGACAGC---GACGAAGAGCTCATCAGAACAGT
55 CAGA----CTCATCAAGCTTCTCAATCAAATCAG--------------------------
56 -------------------------------------
57 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
58 --------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCTCATCAGAACAGT
59 CAGA----CTCATCAAGCTTCTGTA-----------------------------------
60 -------------------------------------
61 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
62 -----------------------------ACAGC---GACGAAGAGCTCATCAGAACAGA
63 CAGA----CTCATCAAGCTTCTCTATCAAAGCAGTAAGTA--------------------
64 ----------------------------TTACAT---