Mercurial > repos > dave > pipelign
comparison test-data/files/NODE_2.aln @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1 | |
| 2 ---------------------------------------------------------TTA | |
| 3 TCAGAAGG------------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAC | |
| 4 ACCC-------AGTGGGGGGACATCAAGCAGCCA-- | |
| 5 >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1 | |
| 6 -----------------------------------------------GTTTTCAGCATTA | |
| 7 TCAGAAGG------------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAA | |
| 8 ACAC-------AGTGGGGGGACAT------------ | |
| 9 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1 | |
| 10 -------------------------------CAGAAGTGATACCCATGTTTTCAGCATTA | |
| 11 TCAGAAGG------------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAA | |
| 12 A----------------------------------- | |
| 13 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1 | |
| 14 -------------------------------TGT-------------AACACCTCAGTCA | |
| 15 TTA------CACAGG--CCTGTCCAAAGGTATCCTTTGAGCCAATTCC--CATACATTAT | |
| 16 TGTG-------------------------------- | |
| 17 >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1 | |
| 18 -------------------------------ATG-------------TATG--------- | |
| 19 ------------GGA--ATTGGCTGAAAGGATACCTTTGGACAGGCCT--GAGTAATGAC | |
| 20 TGAGGTGTTACAA---------CTTGTC-------- | |
| 21 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1 | |
| 22 -------------------------------AA--------------GCTTGTGTAATTG | |
| 23 TTAATTTC---TCTG--TCCCACTCCATCCAGGTCGTGTGATTCCAAC--TCTGTTCCAG | |
| 24 --------------------------AG-------- | |
| 25 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1 | |
| 26 -------------------------------AA--------------AATTTCAAA---- | |
| 27 --------------------------AATTGGGCCTGAAAATCCATAC--AATACTCCAG | |
| 28 TATT-TGCCATAAAGAAAAAAGACAGTA-------- | |
| 29 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1 | |
| 30 -------------------------------GC--------------CTGCATGGAATGG | |
| 31 ATGACCCGGAGAGAG--AAGTGTTAGAGTGGAGGTTTGAGAGCCACCT--AGCAATTCA- | |
| 32 ------------------------------------ | |
| 33 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1 | |
| 34 -------------------------------GTA-------------CTTTCTATAGTGA | |
| 35 ATAGAGTTAGGCAGG--TATATTCACCATTATCGTTTGAGACCCACCT--CCCAACCC-- | |
| 36 ------------------------------------ | |
| 37 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1 | |
| 38 -----------------------------------------------------GGT---- | |
| 39 --------------------------GATATGGGCTGATGTACCATTT--GCCCCTGGAT | |
| 40 GTTC-TGCACTATAGGGTAATTTTGGCTGACCTGAT | |
| 41 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1 | |
| 42 -------------------------------ATAGAG----------CTTCCTTTAGTTG | |
| 43 CCCCCCTATCTTTAT--TGTGACGAGGGGACGTTGCCAAAGAGTGACC--TG-------- | |
| 44 ------------------AGG--------------- | |
| 45 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1 | |
| 46 ------------------------------------------------------------ | |
| 47 -------TTTTTCAG--TTCGCTTAGATGAAGACTTCAGGCAGTATAC--TGCATTTACC | |
| 48 ATACCTAGTATAAACAATGAG--------------- | |
| 49 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1 | |
| 50 ------------------------ATAACCACAGAA-----------------AGCATAG | |
| 51 TAATATGG------------------GGAAAGACTCCTAAATTTAAACTGCCCATACAAA | |
| 52 A---------------GGAAACAT------------ | |
| 53 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1 | |
| 54 ---------------GACCAGCAAAGCACCTCTGGAA----------AGGTGAAGGGGCA | |
| 55 GTAGTAATACAAGAT--AATAGTGACATAAAAGTAGT----------------------- | |
| 56 ------------------------------------ | |
| 57 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1 | |
| 58 ---------------------------------GGAA----------AGGTGAAGGGGCA | |
| 59 GTAGTAATACAAGAT--AATAGTGACATAACAGTAGTG---------------------- | |
| 60 -----------------CGAAGAAGAAAAGCAAA-- | |
| 61 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1 | |
| 62 ------------------------------------------------TTTTATGGTTCA | |
| 63 TAATCCACTCCATGT--ACTGGTTCTTTTAGAATCTCTCATTTTTCT--GCCCGTTCTAG | |
| 64 CT---------------------------------- | |
| 65 >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1 | |
| 66 -------------GAAGCAGAGCTAGAACTGGCAGAA----------AACAGAGAGATTC | |
| 67 TAAAATAACCAGTAC--ATGGAGTGTATTATGACC------------------------- | |
| 68 ------------------------------------ | |
| 69 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1 | |
| 70 -------------------------------------------------------CTCTA | |
| 71 GTGTCCATTCATTGT--GTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTCCAT | |
| 72 CTCTCCT----------------------------- | |
| 73 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1 | |
| 74 TGATTTGTTGTGTCAGTTAGGGTGACAACT------------------TTTTGTGTTCCT | |
| 75 CTATTAGTAACATAT--CCTGCTTTTCCTA------------------------------ | |
| 76 ------------------------------------ | |
| 77 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1 | |
| 78 ----------------------------------GAA----------GTCTTGAGTTCTC | |
| 79 TTATTAA--------------GTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGT | |
| 80 CTTTTTTC---------------------------- | |
| 81 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1 | |
| 82 ------------------------------------------------------------ | |
| 83 ----------------------TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGT | |
| 84 CTTTTTTCTTT--ATGGCAAATACTGGAGTATTG-- | |
| 85 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1 | |
| 86 ---------------GGGGGGAACAGTGCAGGGGAAA----------GAATAGTAGACAT | |
| 87 AATAGCAACAGACAT--ACAAACTAAAGAATTACAA------------------------ | |
| 88 ---------------------------------A-- | |
| 89 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1 | |
| 90 ------------------------------------------------------------ | |
| 91 ------------------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCC | |
| 92 TCATCCTGTCTCCTTGCCACACAATCATCACCTG-- | |
| 93 >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1 | |
| 94 ------------------------------------------------CAGGATTAACTG | |
| 95 CGAATCTT---TCTAGCTCCCTTGTTGCCCATACTATATGTTTTAATT--TATATTTTTT | |
| 96 --------------------------CT-------T |