Mercurial > repos > dave > pipelign
comparison test-data/files/NODE_17.aln @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 | |
| 2 GAT--------------------------------------------------------- | |
| 3 ----------------------------GGTTTTATAGACATCACTATGAAAGCCCTCAT | |
| 4 CCAAGAAAAAGTTCAGAAGTACACA------------------TCCCACTAGG------- | |
| 5 -- | |
| 6 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 | |
| 7 AA---------------------------------------------------------- | |
| 8 -------------------------------TTTATCAAGAGCCATTTAAAAATCTGAAA | |
| 9 ACAGGAAAATATGCAAGAATGAGGGG--------------TGCCCACACTAAT------- | |
| 10 -- | |
| 11 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 | |
| 12 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC---- | |
| 13 -----AGGAAGCAACCACCACTCTATT-----------------------TTGTGCATC- | |
| 14 ------------------------------------------------------------ | |
| 15 -- | |
| 16 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 | |
| 17 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT---- | |
| 18 -----AGCCAGTAGATCCTAGACTAT-------------------------AGCCCTGG- | |
| 19 ------------------------------------------------------------ | |
| 20 -- | |
| 21 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 | |
| 22 --------------------------------------GGAGCT----AGAACGAT---- | |
| 23 -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGG | |
| 24 A----------------------------------------------------------- | |
| 25 -- | |
| 26 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 | |
| 27 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC | |
| 28 TTGTGGGGCTGTTGGCTCTGGTCTGCT--------------------------------- | |
| 29 ------------------------------------------------------------ | |
| 30 -- | |
| 31 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 | |
| 32 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC | |
| 33 TGGTGGGGCAGTTGGCTCTGGTC------------------------------------- | |
| 34 ------------------------------------------------------------ | |
| 35 -- | |
| 36 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 | |
| 37 A-------------------------------------GGGATTATGGAAAACAGA---- | |
| 38 -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGATTAGAACATGG---- | |
| 39 ------------------------------------------------------------ | |
| 40 -- | |
| 41 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 | |
| 42 ------------CGGGCACAC----------------------------ACT-------- | |
| 43 ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTAG--TTAGC | |
| 44 ------------------------------------------------------------ | |
| 45 -- | |
| 46 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 | |
| 47 ------------------------------------------------------------ | |
| 48 -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAG--TTAGC | |
| 49 CAGA----------------------------------------GAGCTCCCA------- | |
| 50 -- | |
| 51 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 | |
| 52 ---------------------------------------------------------TGC | |
| 53 TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA | |
| 54 TATT-------------------------------------------GACCAC------- | |
| 55 -- | |
| 56 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 | |
| 57 ------------GCTGCTCCC----------------------------ACCCTATCTTG | |
| 58 TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCCATCCAATCA------- | |
| 59 ------------------------------------------------------------ | |
| 60 -- | |
| 61 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 | |
| 62 ------------------------------------------------------------ | |
| 63 TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCAATTCTGAAA--CTGGA | |
| 64 TAAA--------------------------------------CAGCAGTTGTT------- | |
| 65 -- | |
| 66 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 | |
| 67 ------------------------------------------------------------ | |
| 68 --------------------------------TGCCAAGGATCCGTTCACTAA--TCGAA | |
| 69 TGGA---------TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT------- | |
| 70 -- | |
| 71 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 | |
| 72 ------------------------------------------------------------ | |
| 73 TTCTGGGAAGTTCAAT----------------TAGGAATACCACATCCCGCAGGGTTAAA | |
| 74 AAAG---------AAAAAATCAGT------------------AACAGTACTGG------- | |
| 75 -- | |
| 76 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 | |
| 77 ------------------------------------------------------------ | |
| 78 CTATG------TTTAC----------------TTCTAATCCCGAATCCTGCAAAGCTAGA | |
| 79 TAAAT----TGCTTGTAACTCAGTC-----------------TTCTGATTTGT------- | |
| 80 -- | |
| 81 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 | |
| 82 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC | |
| 83 TCCCAAAGAAGACAAG----ATATCCTTGATC---------------------------- | |
| 84 ------------------------------------------------------------ | |
| 85 -- | |
| 86 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 | |
| 87 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC | |
| 88 TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA---------------------- | |
| 89 ------------------------------------------------------------ | |
| 90 -- | |
| 91 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 | |
| 92 -------------------------------------------------GGCTAATTCAC | |
| 93 TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACCACCCACAAG------- | |
| 94 -------------------------------------------GCTACTTCCC------- | |
| 95 -- | |
| 96 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 | |
| 97 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC | |
| 98 CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACTATTTTT---------- | |
| 99 ------------------------------------------------------------ | |
| 100 -- | |
| 101 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 | |
| 102 -----------------------------------AATAGTACTTT---CCTGATTCCAG | |
| 103 CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCCTTTGTGTG-------- | |
| 104 ------------------------------------------------------------ | |
| 105 -- | |
| 106 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 | |
| 107 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT | |
| 108 CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATCAG-------------- | |
| 109 ------------------------------------------------------------ | |
| 110 -- | |
| 111 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 | |
| 112 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT | |
| 113 CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA----------------------- | |
| 114 ------------------------------------------------------------ | |
| 115 -- | |
| 116 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 | |
| 117 -----------------------------------------ACAGC---GACGAAGAGCT | |
| 118 CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGCAGTAAGTA-------- | |
| 119 --------------------------------------------TTACAT---------- | |
| 120 -- | |
| 121 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 | |
| 122 ------------------------------------------------------------ | |
| 123 -------------------------------------AGCCATTGCTCTCCAA--TTACT | |
| 124 GTGA---------TATTTCTCATGTTCATCTTGGGCCTT----AACTATTCCATCTAAAA | |
| 125 AT |