Mercurial > repos > dave > pipelign
comparison test-data/files/input.merge.2.fas @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1 | |
| 2 ---------------------------CTACCTCTTCTTCTGCTAGACTGCC-------A | |
| 3 TTTAACAGCAGTTGAGTTGATACTACTGGCCTAATTCCATGTGT | |
| 4 >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1 | |
| 5 -------------TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCA-------G | |
| 6 TCTAGCAGAAGAAGAGGTAGTAAT-------TAGATC------- | |
| 7 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1 | |
| 8 ---TAACGCCACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAAC---AAGC | |
| 9 CCCAGAAGACGAAGGG---------------------------- | |
| 10 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1 | |
| 11 GTGGAGA--------GAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCC----- | |
| 12 -TTGGCACTTATCTGGGA-------------CGATCT------- | |
| 13 >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1 | |
| 14 TCCGAAGATCGTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGA--C | |
| 15 TCTGTCTCT-------------------------CTC------- | |
| 16 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1 | |
| 17 CCAAGTA-----TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAATC | |
| 18 CTAGGAAAATGTCTA----------------------------- | |
| 19 >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1 | |
| 20 -----TA-----TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAATC | |
| 21 CTAGGAAAATGTCTAAC-----------------AGC------- | |
| 22 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1 | |
| 23 ----TGC-----TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAAGGCCATATC | |
| 24 TTCCCTAAAAAATTAGC-----------------CTGTCT---- | |
| 25 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1 | |
| 26 AAGTGCAA------------------GCAATCTGATTCACCCGATTTCTTCC-------A | |
| 27 ATTATGATGACAGGTGTAGGTCCTACTAATACAGT--------- | |
| 28 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 | |
| 29 GAT--------------------------------------------------------- | |
| 30 ----------------------------GGTTTTATAGACATCACTATGAAAGCCCTCAT | |
| 31 CCAAGAAAAAGTTCAGAAGTACACA------------------TCCCACTAGG------- | |
| 32 -- | |
| 33 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 | |
| 34 AA---------------------------------------------------------- | |
| 35 -------------------------------TTTATCAAGAGCCATTTAAAAATCTGAAA | |
| 36 ACAGGAAAATATGCAAGAATGAGGGG--------------TGCCCACACTAAT------- | |
| 37 -- | |
| 38 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 | |
| 39 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC---- | |
| 40 -----AGGAAGCAACCACCACTCTATT-----------------------TTGTGCATC- | |
| 41 ------------------------------------------------------------ | |
| 42 -- | |
| 43 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 | |
| 44 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT---- | |
| 45 -----AGCCAGTAGATCCTAGACTAT-------------------------AGCCCTGG- | |
| 46 ------------------------------------------------------------ | |
| 47 -- | |
| 48 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 | |
| 49 --------------------------------------GGAGCT----AGAACGAT---- | |
| 50 -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGG | |
| 51 A----------------------------------------------------------- | |
| 52 -- | |
| 53 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 | |
| 54 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC | |
| 55 TTGTGGGGCTGTTGGCTCTGGTCTGCT--------------------------------- | |
| 56 ------------------------------------------------------------ | |
| 57 -- | |
| 58 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 | |
| 59 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC | |
| 60 TGGTGGGGCAGTTGGCTCTGGTC------------------------------------- | |
| 61 ------------------------------------------------------------ | |
| 62 -- | |
| 63 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 | |
| 64 A-------------------------------------GGGATTATGGAAAACAGA---- | |
| 65 -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGATTAGAACATGG---- | |
| 66 ------------------------------------------------------------ | |
| 67 -- | |
| 68 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 | |
| 69 ------------CGGGCACAC----------------------------ACT-------- | |
| 70 ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTAG--TTAGC | |
| 71 ------------------------------------------------------------ | |
| 72 -- | |
| 73 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 | |
| 74 ------------------------------------------------------------ | |
| 75 -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAG--TTAGC | |
| 76 CAGA----------------------------------------GAGCTCCCA------- | |
| 77 -- | |
| 78 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 | |
| 79 ---------------------------------------------------------TGC | |
| 80 TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA | |
| 81 TATT-------------------------------------------GACCAC------- | |
| 82 -- | |
| 83 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 | |
| 84 ------------GCTGCTCCC----------------------------ACCCTATCTTG | |
| 85 TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCCATCCAATCA------- | |
| 86 ------------------------------------------------------------ | |
| 87 -- | |
| 88 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 | |
| 89 ------------------------------------------------------------ | |
| 90 TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCAATTCTGAAA--CTGGA | |
| 91 TAAA--------------------------------------CAGCAGTTGTT------- | |
| 92 -- | |
| 93 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 | |
| 94 ------------------------------------------------------------ | |
| 95 --------------------------------TGCCAAGGATCCGTTCACTAA--TCGAA | |
| 96 TGGA---------TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT------- | |
| 97 -- | |
| 98 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 | |
| 99 ------------------------------------------------------------ | |
| 100 TTCTGGGAAGTTCAAT----------------TAGGAATACCACATCCCGCAGGGTTAAA | |
| 101 AAAG---------AAAAAATCAGT------------------AACAGTACTGG------- | |
| 102 -- | |
| 103 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 | |
| 104 ------------------------------------------------------------ | |
| 105 CTATG------TTTAC----------------TTCTAATCCCGAATCCTGCAAAGCTAGA | |
| 106 TAAAT----TGCTTGTAACTCAGTC-----------------TTCTGATTTGT------- | |
| 107 -- | |
| 108 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 | |
| 109 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC | |
| 110 TCCCAAAGAAGACAAG----ATATCCTTGATC---------------------------- | |
| 111 ------------------------------------------------------------ | |
| 112 -- | |
| 113 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 | |
| 114 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC | |
| 115 TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA---------------------- | |
| 116 ------------------------------------------------------------ | |
| 117 -- | |
| 118 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 | |
| 119 -------------------------------------------------GGCTAATTCAC | |
| 120 TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACCACCCACAAG------- | |
| 121 -------------------------------------------GCTACTTCCC------- | |
| 122 -- | |
| 123 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 | |
| 124 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC | |
| 125 CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACTATTTTT---------- | |
| 126 ------------------------------------------------------------ | |
| 127 -- | |
| 128 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 | |
| 129 -----------------------------------AATAGTACTTT---CCTGATTCCAG | |
| 130 CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCCTTTGTGTG-------- | |
| 131 ------------------------------------------------------------ | |
| 132 -- | |
| 133 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 | |
| 134 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT | |
| 135 CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATCAG-------------- | |
| 136 ------------------------------------------------------------ | |
| 137 -- | |
| 138 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 | |
| 139 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT | |
| 140 CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA----------------------- | |
| 141 ------------------------------------------------------------ | |
| 142 -- | |
| 143 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 | |
| 144 -----------------------------------------ACAGC---GACGAAGAGCT | |
| 145 CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGCAGTAAGTA-------- | |
| 146 --------------------------------------------TTACAT---------- | |
| 147 -- | |
| 148 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 | |
| 149 ------------------------------------------------------------ | |
| 150 -------------------------------------AGCCATTGCTCTCCAA--TTACT | |
| 151 GTGA---------TATTTCTCATGTTCATCTTGGGCCTT----AACTATTCCATCTAAAA | |
| 152 AT |