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comparison test-data/files/long.44.hmm @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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-1:000000000000 0:9a3a2e04f47a
1 HMMER3/f [3.2.1 | June 2018]
2 NAME long.44.aln
3 LENG 70
4 MAXL 160
5 ALPH DNA
6 RF no
7 MM no
8 CONS yes
9 CS no
10 MAP yes
11 DATE Tue May 28 13:12:02 2019
12 NSEQ 2
13 EFFN 2.000000
14 CKSUM 2374664696
15 STATS LOCAL MSV -8.0688 0.72046
16 STATS LOCAL VITERBI -9.1038 0.72046
17 STATS LOCAL FORWARD -3.5428 0.72046
18 HMM A C G T
19 m->m m->i m->d i->m i->i d->m d->d
20 COMPO 1.13770 1.75158 1.40669 1.34326
21 1.38629 1.38629 1.38629 1.38629
22 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
23 1 0.28818 2.60848 2.42319 2.42940 1 a - - -
24 1.38629 1.38629 1.38629 1.38629
25 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
26 2 2.31486 2.12647 2.41211 0.36768 2 t - - -
27 1.38629 1.38629 1.38629 1.38629
28 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
29 3 2.31486 2.12647 2.41211 0.36768 3 t - - -
30 1.38629 1.38629 1.38629 1.38629
31 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
32 4 2.38910 2.82844 0.25233 2.62837 4 g - - -
33 1.38629 1.38629 1.38629 1.38629
34 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
35 5 2.31486 2.12647 2.41211 0.36768 5 t - - -
36 1.38629 1.38629 1.38629 1.38629
37 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
38 6 0.28818 2.60848 2.42319 2.42940 6 a - - -
39 1.38629 1.38629 1.38629 1.38629
40 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
41 7 2.46232 0.33808 2.58153 2.07174 7 c - - -
42 1.38629 1.38629 1.38629 1.38629
43 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
44 8 0.28818 2.60848 2.42319 2.42940 8 a - - -
45 1.38629 1.38629 1.38629 1.38629
46 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
47 9 2.46232 0.33808 2.58153 2.07174 9 c - - -
48 1.38629 1.38629 1.38629 1.38629
49 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
50 10 0.28818 2.60848 2.42319 2.42940 10 a - - -
51 1.38629 1.38629 1.38629 1.38629
52 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
53 11 2.31486 2.12647 2.41211 0.36768 11 t - - -
54 1.38629 1.38629 1.38629 1.38629
55 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
56 12 2.31486 2.12647 2.41211 0.36768 12 t - - -
57 1.38629 1.38629 1.38629 1.38629
58 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
59 13 2.31486 2.12647 2.41211 0.36768 13 t - - -
60 1.38629 1.38629 1.38629 1.38629
61 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
62 14 0.28818 2.60848 2.42319 2.42940 14 a - - -
63 1.38629 1.38629 1.38629 1.38629
64 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
65 15 2.38910 2.82844 0.25233 2.62837 15 g - - -
66 1.38629 1.38629 1.38629 1.38629
67 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
68 16 0.28818 2.60848 2.42319 2.42940 16 a - - -
69 1.38629 1.38629 1.38629 1.38629
70 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
71 17 0.28818 2.60848 2.42319 2.42940 17 a - - -
72 1.38629 1.38629 1.38629 1.38629
73 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
74 18 2.31486 2.12647 2.41211 0.36768 18 t - - -
75 1.38629 1.38629 1.38629 1.38629
76 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
77 19 2.38910 2.82844 0.25233 2.62837 19 g - - -
78 1.38629 1.38629 1.38629 1.38629
79 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
80 20 0.28818 2.60848 2.42319 2.42940 20 a - - -
81 1.38629 1.38629 1.38629 1.38629
82 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
83 21 0.28818 2.60848 2.42319 2.42940 21 a - - -
84 1.38629 1.38629 1.38629 1.38629
85 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
86 22 0.28818 2.60848 2.42319 2.42940 22 a - - -
87 1.38629 1.38629 1.38629 1.38629
88 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
89 23 0.28818 2.60848 2.42319 2.42940 23 a - - -
90 1.38629 1.38629 1.38629 1.38629
91 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
92 24 2.38910 2.82844 0.25233 2.62837 24 g - - -
93 1.38629 1.38629 1.38629 1.38629
94 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
95 25 2.31486 2.12647 2.41211 0.36768 25 t - - -
96 1.38629 1.38629 1.38629 1.38629
97 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
98 26 2.31486 2.12647 2.41211 0.36768 26 t - - -
99 1.38629 1.38629 1.38629 1.38629
100 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
101 27 0.28818 2.60848 2.42319 2.42940 27 a - - -
102 1.38629 1.38629 1.38629 1.38629
103 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
104 28 2.31486 2.12647 2.41211 0.36768 28 t - - -
105 1.38629 1.38629 1.38629 1.38629
106 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
107 29 2.46232 0.33808 2.58153 2.07174 29 c - - -
108 1.38629 1.38629 1.38629 1.38629
109 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
110 30 2.46232 0.33808 2.58153 2.07174 30 c - - -
111 1.38629 1.38629 1.38629 1.38629
112 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
113 31 2.31486 2.12647 2.41211 0.36768 31 t - - -
114 1.38629 1.38629 1.38629 1.38629
115 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
116 32 2.38910 2.82844 0.25233 2.62837 32 g - - -
117 1.38629 1.38629 1.38629 1.38629
118 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
119 33 2.38910 2.82844 0.25233 2.62837 33 g - - -
120 1.38629 1.38629 1.38629 1.38629
121 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
122 34 2.31486 2.12647 2.41211 0.36768 34 t - - -
123 1.38629 1.38629 1.38629 1.38629
124 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
125 35 0.28818 2.60848 2.42319 2.42940 35 a - - -
126 1.38629 1.38629 1.38629 1.38629
127 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
128 36 2.38910 2.82844 0.25233 2.62837 36 g - - -
129 1.38629 1.38629 1.38629 1.38629
130 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
131 37 2.46232 0.33808 2.58153 2.07174 37 c - - -
132 1.38629 1.38629 1.38629 1.38629
133 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
134 38 0.28818 2.60848 2.42319 2.42940 38 a - - -
135 1.38629 1.38629 1.38629 1.38629
136 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
137 39 2.38910 2.82844 0.25233 2.62837 39 g - - -
138 1.38629 1.38629 1.38629 1.38629
139 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
140 40 2.31486 2.12647 2.41211 0.36768 40 t - - -
141 1.38629 1.38629 1.38629 1.38629
142 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
143 41 2.31486 2.12647 2.41211 0.36768 41 t - - -
144 1.38629 1.38629 1.38629 1.38629
145 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
146 42 2.46232 0.33808 2.58153 2.07174 42 c - - -
147 1.38629 1.38629 1.38629 1.38629
148 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
149 43 0.28818 2.60848 2.42319 2.42940 43 a - - -
150 1.38629 1.38629 1.38629 1.38629
151 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
152 44 2.31486 2.12647 2.41211 0.36768 44 t - - -
153 1.38629 1.38629 1.38629 1.38629
154 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
155 45 2.38910 2.82844 0.25233 2.62837 45 g - - -
156 1.38629 1.38629 1.38629 1.38629
157 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
158 46 2.31486 2.12647 2.41211 0.36768 46 t - - -
159 1.38629 1.38629 1.38629 1.38629
160 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
161 47 0.28818 2.60848 2.42319 2.42940 47 a - - -
162 1.38629 1.38629 1.38629 1.38629
163 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
164 48 2.38910 2.82844 0.25233 2.62837 48 g - - -
165 1.38629 1.38629 1.38629 1.38629
166 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
167 49 2.46232 0.33808 2.58153 2.07174 49 c - - -
168 1.38629 1.38629 1.38629 1.38629
169 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
170 50 2.46232 0.33808 2.58153 2.07174 50 c - - -
171 1.38629 1.38629 1.38629 1.38629
172 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
173 51 0.28818 2.60848 2.42319 2.42940 51 a - - -
174 1.38629 1.38629 1.38629 1.38629
175 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
176 52 2.38910 2.82844 0.25233 2.62837 52 g - - -
177 1.38629 1.38629 1.38629 1.38629
178 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
179 53 2.31486 2.12647 2.41211 0.36768 53 t - - -
180 1.38629 1.38629 1.38629 1.38629
181 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
182 54 2.38910 2.82844 0.25233 2.62837 54 g - - -
183 1.38629 1.38629 1.38629 1.38629
184 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
185 55 2.38910 2.82844 0.25233 2.62837 55 g - - -
186 1.38629 1.38629 1.38629 1.38629
187 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
188 56 0.28818 2.60848 2.42319 2.42940 56 a - - -
189 1.38629 1.38629 1.38629 1.38629
190 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
191 57 2.31486 2.12647 2.41211 0.36768 57 t - - -
192 1.38629 1.38629 1.38629 1.38629
193 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
194 58 0.28818 2.60848 2.42319 2.42940 58 a - - -
195 1.38629 1.38629 1.38629 1.38629
196 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
197 59 2.31486 2.12647 2.41211 0.36768 59 t - - -
198 1.38629 1.38629 1.38629 1.38629
199 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
200 60 0.28818 2.60848 2.42319 2.42940 60 a - - -
201 1.38629 1.38629 1.38629 1.38629
202 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
203 61 2.31486 2.12647 2.41211 0.36768 61 t - - -
204 1.38629 1.38629 1.38629 1.38629
205 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
206 62 0.28818 2.60848 2.42319 2.42940 62 a - - -
207 1.38629 1.38629 1.38629 1.38629
208 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
209 63 2.38910 2.82844 0.25233 2.62837 63 g - - -
210 1.38629 1.38629 1.38629 1.38629
211 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
212 64 0.28818 2.60848 2.42319 2.42940 64 a - - -
213 1.38629 1.38629 1.38629 1.38629
214 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
215 65 0.28818 2.60848 2.42319 2.42940 65 a - - -
216 1.38629 1.38629 1.38629 1.38629
217 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
218 66 2.38910 2.82844 0.25233 2.62837 66 g - - -
219 1.38629 1.38629 1.38629 1.38629
220 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
221 67 2.46232 0.33808 2.58153 2.07174 67 c - - -
222 1.38629 1.38629 1.38629 1.38629
223 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
224 68 0.28818 2.60848 2.42319 2.42940 68 a - - -
225 1.38629 1.38629 1.38629 1.38629
226 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
227 69 2.38910 2.82844 0.25233 2.62837 69 g - - -
228 1.38629 1.38629 1.38629 1.38629
229 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
230 70 0.28818 2.60848 2.42319 2.42940 70 a - - -
231 1.38629 1.38629 1.38629 1.38629
232 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
233 //