Mercurial > repos > dave > pipelign
comparison test-data/files/grp @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1 | |
| 2 CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACA | |
| 3 CCATGCTAAA | |
| 4 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 | |
| 5 GAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCA | |
| 6 ATCAAATCAG | |
| 7 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1 | |
| 8 ATCCTCATGCATCTGTTCTACCATGTCATTTTTCCACATGTTAAAATTTTCTGTCACATT | |
| 9 TACCAATACT | |
| 10 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 | |
| 11 CTATGTTTACTTCTAATCCCGAATCCTGCAAAGCTAGATAAATTGCTTGTAACTCAGTCT | |
| 12 TCTGATTTGT | |
| 13 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1 | |
| 14 CCAAGTATCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAATCCTAGG | |
| 15 AAAATGTCTA | |
| 16 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1 | |
| 17 CTACTATTGCTACTAATGGTATAGGTTGCGTTACATGTACTACTTACTGCTTTGATAGAG | |
| 18 AAGCTTGATG | |
| 19 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1 | |
| 20 TCTTTGCCTTGGTTGGAGCAACTCCTAATGGTTGAATTTTTACTACTTTATATTTATATA | |
| 21 ATTCCCTTCT | |
| 22 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1 | |
| 23 AATAGCAATTTGTACAAGCAGTTTTAGGCTGACTTCGTGGATGCTTCCAGGGCTCTCGTC | |
| 24 TAGGATCAAC | |
| 25 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 | |
| 26 ACAACGGAATTGGAGGAAATGAACCAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAG | |
| 27 TACTATTTTT | |
| 28 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1 | |
| 29 AGGATTTTACATAATTGCCTTACTTAAATCCCTGGGTAAATCTGACTTGCCCAATTCAAT | |
| 30 TTCCCCACTA | |
| 31 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1 | |
| 32 TTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTACACCCAGTGGGGGGACAT | |
| 33 CAAGCAGCCA | |
| 34 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1 | |
| 35 CTACCTCTTCTTCTGCTAGACTGCCATTTAACAGCAGTTGAGTTGATACTACTGGCCTAA | |
| 36 TTCCATGTGT | |
| 37 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1 | |
| 38 TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTCTTTATGGCAAATAC | |
| 39 TGGAGTATTG | |
| 40 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 | |
| 41 TGCCAAGGATCCGTTCACTAATCGAATGGATCTGTCTCTGTCTCTCTCTCCACCTTCTTC | |
| 42 TTCTATTCCT | |
| 43 >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1 | |
| 44 CAGGATTAACTGCGAATCTTTCTAGCTCCCTTGTTGCCCATACTATATGTTTTAATTTAT | |
| 45 ATTTTTTCTT | |
| 46 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 | |
| 47 GCTGCTCCCACCCTATCTTGTGCTGGCTCAGCTCGTCTCATTGTTTCCCTTACAGTAGGC | |
| 48 CATCCAATCA | |
| 49 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1 | |
| 50 ACAGTAGAAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATCTGGGTCCCCTCCT | |
| 51 GAGGATTGGT | |
| 52 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 | |
| 53 AGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGAT | |
| 54 TAGAACATGG | |
| 55 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1 | |
| 56 GATCCTGCATATAAGCAGCAGCTTTTTGCCTTTACTGGTTCTCTCTGGTTAGACCAGATC | |
| 57 TGAGCCTGGG | |
| 58 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1 | |
| 59 GTACTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCACCATTATCGTTTGAGACCCAC | |
| 60 CTCCCAACCC | |
| 61 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1 | |
| 62 CAGAGGAGGTCTCTCGACGCAGGACTCGGCTTGCTGAAGGGCGCACGGCAAGAGGCGAGG | |
| 63 GGCGGCGACT | |
| 64 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1 | |
| 65 GTCTGGGGCATCAAGCAGCTCCAGGCAAGAATGCTGGCTGTGGAAAGATACCTAAAGGAT | |
| 66 CAACAGCTCC | |
| 67 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1 | |
| 68 TTTTTCAGTTCGCTTAGATGAAGACTTCAGGCAGTATACTGCATTTACCATACCTAGTAT | |
| 69 AAACAATGAG | |
| 70 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 | |
| 71 ACAGCGACGAAGAGCTCATCAGAACAGACAGACTCATCAAGCTTCTCTATCAAAGCAGTA | |
| 72 AGTATTACAT | |
| 73 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1 | |
| 74 GGGGGGAACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAA | |
| 75 GAATTACAAA | |
| 76 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1 | |
| 77 TGCTCTGAAGAAAATTCCCTGGCCTTCCCTTGTAGTAAGGCCATATCTTCCCTAAAAAAT | |
| 78 TAGCCTGTCT | |
| 79 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 | |
| 80 GGCTAATTCACTCCCAACGAAGACAAGATATCCTTGATCTGTGGATGTACCACCCACAAG | |
| 81 GCTACTTCCC | |
| 82 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1 | |
| 83 TGATTTGTTGTGTCAGTTAGGGTGACAACTTTTTGTGTTCCTCTATTAGTAACATATCCT | |
| 84 GCTTTTCCTA | |
| 85 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1 | |
| 86 TAACGCCACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAACAAGCCCCAGA | |
| 87 AGACGAAGGG | |
| 88 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1 | |
| 89 GTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCT | |
| 90 GGGACGATCT | |
| 91 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 | |
| 92 TTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTA | |
| 93 ACAGTACTGG | |
| 94 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1 | |
| 95 CTCTAGTGTCCATTCATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTC | |
| 96 CATCTCTCCT | |
| 97 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 | |
| 98 AGCCATTGCTCTCCAATTACTGTGATATTTCTCATGTTCATCTTGGGCCTTAACTATTCC | |
| 99 ATCTAAAAAT | |
| 100 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 | |
| 101 TGCTGCTGGCTCAGCTCGTCTCATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA | |
| 102 TATTGACCAC | |
| 103 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1 | |
| 104 TCGGAGTCATTGTTGCTATTACCACCATCTTTTGTTCATAGCAGCCCTGTAATATTTGAT | |
| 105 TAACATCTAA | |
| 106 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1 | |
| 107 ATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAA | |
| 108 AAGGAAACAT | |
| 109 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1 | |
| 110 TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTCATCCTGTCTCCTTGCCACACAA | |
| 111 TCATCACCTG | |
| 112 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1 | |
| 113 ACCCATCTTATAGCAAAATCCTTTCCAAGCCCTGTCTTATTCTTCTAGGTATGTGGCGAA | |
| 114 TAGCTCTACA | |
| 115 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 | |
| 116 GAGGGGGAGTTGTTGTCTGTACCCCAGACCTGAAGCTCTCTTCTTGTGGGGCTGTTGGCT | |
| 117 CTGGTCTGCT | |
| 118 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1 | |
| 119 TATAAAGACGCAGAAGTTATTCCAGCATACACAGGGCAGGAAACAGCATATTTTCTTTTC | |
| 120 AAATTAGCAG | |
| 121 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1 | |
| 122 TGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATA | |
| 123 CATTATTGTG | |
| 124 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1 | |
| 125 GGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAACAGTAGTGCGAAGAA | |
| 126 GAAAAGCAAA | |
| 127 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1 | |
| 128 AAGTGCAAGCAATCTGATTCACCCGATTTCTTCCAATTATGATGACAGGTGTAGGTCCTA | |
| 129 CTAATACAGT | |
| 130 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1 | |
| 131 TATGGTACCAGTTAGAGAAAGAACCCCTAGTAGGAGCAGAAACCTTCTATGTAGATGGGG | |
| 132 CAGCTAACAG | |
| 133 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1 | |
| 134 ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATA | |
| 135 TAGAAGCAGA | |
| 136 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1 | |
| 137 TGACAGAAACCTAGTTGGTCCAAAATGCGAACCCAGATTGTAAGACAATTTTAAAAGCAT | |
| 138 TGGGACCAGC | |
| 139 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1 | |
| 140 GGTGATATGGGCTGATGTACCATTTGCCCCTGGATGTTCTGCACTATAGGGTAATTTTGG | |
| 141 CTGACCTGAT | |
| 142 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1 | |
| 143 GCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGAGAGCCACC | |
| 144 TAGCAATTCA | |
| 145 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1 | |
| 146 TCCTGACTCCAATACTGTAGGAGATTCCACCAATATTTGAGGGCTTCCCACCCCCTGCGT | |
| 147 CCCAGAAGTT | |
| 148 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1 | |
| 149 ATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGA | |
| 150 GTAGGATGAC | |
| 151 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1 | |
| 152 CAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTT | |
| 153 GAGTGGTCCA | |
| 154 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 | |
| 155 CACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGAT | |
| 156 ATCCTTGATC | |
| 157 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 | |
| 158 CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAGTTAGCCAG | |
| 159 AGAGCTCCCA | |
| 160 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1 | |
| 161 ACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAA | |
| 162 TAGTAGCCCG | |
| 163 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 | |
| 164 AATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGC | |
| 165 CCACACTAAT | |
| 166 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1 | |
| 167 TTAAAATTTTCTGTCACATTTACCAATACTACTTCTTGTGGGTTGGGGTCTGTGGGTACA | |
| 168 CAGGCATGTG | |
| 169 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1 | |
| 170 TCCAAGCCCTGTCTTATTCTTCTAGGTATGTGGCGCATAGCTCTACAAGCTCCTTGTACT | |
| 171 ACTTCAATAA | |
| 172 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1 | |
| 173 TGTGTTCAGCTGTACTATTATGGTTATAGCATTTTCCGTGAAATTGACAGATCTAATTAC | |
| 174 TACCTCTTCT | |
| 175 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 | |
| 176 GATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAAAAAGTTCAGAAGTACACA | |
| 177 TCCCACTAGG | |
| 178 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 | |
| 179 TCCTCTGTCGAGTAACGCCTATTCTGCTATGACGACACCCAATTCTGAAACTGGATAAAC | |
| 180 AGCAGTTGTT | |
| 181 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1 | |
| 182 AGTTCATGTATCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGGCTGA | |
| 183 AACAGCATAT | |
| 184 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 | |
| 185 GGAGCTAGAACGATTCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACA | |
| 186 AATACTGGGA | |
| 187 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1 | |
| 188 AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAA | |
| 189 AAAGACAGTA | |
| 190 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1 | |
| 191 AGTAAGTAGTACCTGTAACGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAG | |
| 192 CACTAATAAT | |
| 193 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1 | |
| 194 CGAGCAAGCTTCACAGGAGTTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGC | |
| 195 GAACCCAGAT | |
| 196 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1 | |
| 197 GACCAGCAAAGCACCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACA | |
| 198 TAAAAGTAGT | |
| 199 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1 | |
| 200 CCCCATATTACTATGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTACA | |
| 201 TCATTAGTGT | |
| 202 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 | |
| 203 CGGGCACACACTACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTC | |
| 204 CCTAGTTAGC | |
| 205 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1 | |
| 206 CACCCATCCAAAGGAATTGAGGTTCTTTCTGATGTTTTTTGTCTGGTGTGGTAAGTCCCC | |
| 207 ACCTCGACAG | |
| 208 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1 | |
| 209 TTTTATGGTTCATAATCCACTCCATGTACTGGTTCTTTTAGAATCTCTCATTTTTCTGCC | |
| 210 CGTTCTAGCT | |
| 211 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1 | |
| 212 CTTTATATTTTTTCTTACCCCCTGGCCTTAACCGAATTTTTTCCCATCGATCTAATTCTC | |
| 213 CCCCGCTTAA | |
| 214 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1 | |
| 215 TAGGAACCAAAGAAAGATAGTTAAGTGTTTCAATTGTGGCACAGAAGGGCACACAGCCAG | |
| 216 AAATTGCAGG | |
| 217 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1 | |
| 218 TCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTCTTATGTCCAGAATGCTGGTAGGG | |
| 219 CTATACATTC | |
| 220 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1 | |
| 221 ATAGAGCTTCCTTTAGTTGCCCCCCTATCTTTATTGTGACGAGGGGACGTTGCCAAAGAG | |
| 222 TGACCTGAGG | |
| 223 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1 | |
| 224 GAAGTCTTGAGTTCTCTTATTAAGTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACT | |
| 225 GTCTTTTTTC | |
| 226 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1 | |
| 227 TTTGATTGACTAACTCTGATTCACTTTGATCTTGTAGTGCTTGAATGATTCCTAATGCAT | |
| 228 ATTGTGAGTC | |
| 229 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1 | |
| 230 ACTTTATATTTATATAATTCACTTCTCCAATTGTCCCTCATCTCTCCTCCTCCAGGTCTG | |
| 231 AAGATCTCGG | |
| 232 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 | |
| 233 AGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGTAGCCAGTAGATCCTAGACT | |
| 234 ATAGCCCTGG | |
| 235 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1 | |
| 236 CTTCTTCTGTTAGTGGTATTACTTCTGTTAGTGCTTTGGTACCTCTAAGGAGTTTACATA | |
| 237 ATTGCCTTAC | |
| 238 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1 | |
| 239 AAGCTTGTGTAATTGTTAATTTCTCTGTCCCACTCCATCCAGGTCGTGTGATTCCAACTC | |
| 240 TGTTCCAGAG | |
| 241 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1 | |
| 242 TCCCTGTTCGGGCGCCACTGCTAGAGATTTTCCACACTGACTAAAAGGGTCTGAGGGATC | |
| 243 TCTAGTTACC | |
| 244 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1 | |
| 245 GCCACAGAGGGAGCCACACAATGAATGGACACTATAGCTTTTAGAGGAGCTTAAGAATGA | |
| 246 AGCTGTTAGA | |
| 247 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1 | |
| 248 CAGATACCTAAATGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTG | |
| 249 CACCCCTGCT | |
| 250 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 | |
| 251 AATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGCAGGAAGCAACCACCACTCTAT | |
| 252 TTTGTGCATC |