Mercurial > repos > dave > pipelign
comparison test-data/files/NODE_0.aln @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
equal
deleted
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replaced
| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1 | |
| 2 ------------------------------------------------------------ | |
| 3 ----------------------------GA------TCCTGC-------------ATATA | |
| 4 AGCAGCAGCTTTTTGCCTTT------------ACTGGTTCTCTCTGGTTAGAC------- | |
| 5 ------------------------------------------------------CAGATC | |
| 6 TGAGCCTGGG---------------------------- | |
| 7 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1 | |
| 8 ------------------------------------------------------------ | |
| 9 ---------------------------CAG------ATACCT-------------AAATG | |
| 10 ATCAACAGCTCCTGGGGATT-------------TGGGGTTGCTCTGGAAAACT------- | |
| 11 ------------------------------------------------------CATTTG | |
| 12 CACCCCTGCT---------------------------- | |
| 13 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1 | |
| 14 GTCTGG------------------------------------GGCATCAAGCAGCTCCAG | |
| 15 G-------CAAGAATGCTGGCTGTGGAAAG------ATACCT-------------AAAGG | |
| 16 ATCAACAGCTCC------------------------------------------------ | |
| 17 ------------------------------------------------------------ | |
| 18 -------------------------------------- | |
| 19 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1 | |
| 20 ------------------------------------------------------------ | |
| 21 -------------------ACAGTAGAAAA------ATTCCCCTCCACCATTAAAACTGT | |
| 22 GGTTACAATATC---------------------TGGGTCCCCTCC--------------- | |
| 23 -----------------------------------------------------------T | |
| 24 GAGGATTGGT---------------------------- | |
| 25 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1 | |
| 26 ------------------------------------------------------------ | |
| 27 -------------------ACAGTAGAAAA------ATTCCCCTCCACAATTAAAACTGT | |
| 28 GGTTACAATTTC---------------------TGGGTCCCCTCC--------------- | |
| 29 -----------------------------------------------------------T | |
| 30 GAGGATTGCT---------------------------- | |
| 31 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1 | |
| 32 TCCTG------------------------------------------------ACTCCAA | |
| 33 ------------------TACTGTAGGAGA------TTCCAC------------------ | |
| 34 -----CAATATT---------------------TGAGGGCTTCCCACCCCCTG------- | |
| 35 ------------------------------------------------------CGTCCC | |
| 36 AGAAGTT------------------------------- | |
| 37 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1 | |
| 38 ----------------------------------------------------ATCCTCAT | |
| 39 -------------GCATCTGTTCTACCATG------TCATTTTT-----------CCACA | |
| 40 TGTTAAAATTTTCTGT-----------------CACATTTAC---CAATACT-------- | |
| 41 ------------------------------------------------------------ | |
| 42 -------------------------------------- | |
| 43 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1 | |
| 44 ----------------------------------------------------TT------ | |
| 45 ---------------GGTAAATGTGACAGA------AAATTTTA-----------ACATG | |
| 46 TGGAAAAATGACATGG-----------------TAGA---AC---AGATGCA-------- | |
| 47 ------------------------------------------------------------ | |
| 48 ---------------TGAGGATATAA------------ | |
| 49 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1 | |
| 50 ------------------------------------------------------------ | |
| 51 ---------------GGTAAATGTGACAGA------AAATTTTA-----------ACATG | |
| 52 TGGAAAAATGACATGG-----------------TAGA---AC---AGATGCA-------- | |
| 53 ------------------------------------------------------------ | |
| 54 ---------------TGAGGATATAAT-----C----- | |
| 55 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1 | |
| 56 ------------------------------------------------------------ | |
| 57 ------------------------------------------------------------ | |
| 58 --TTAAAATTTTCTGT-----------------CACATTTAC---CAATACTA------- | |
| 59 ------------------------------------------------------CTTCTT | |
| 60 GTGGGTTGGGGTCTGTGGGTACACAGGCATGTG----- | |
| 61 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1 | |
| 62 ------------------------------------------------------------ | |
| 63 --------------CACCCATCCAAAGGAA------TTGAGGTT-----------CTTT- | |
| 64 --CTGATGTTTTTTGT-----------------CTGGTGTGG---TAAGTCCC------- | |
| 65 ------------------------------------------------------CACCTC | |
| 66 GACAG--------------------------------- | |
| 67 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1 | |
| 68 CTTTA------------------------------------------TATTTTTTCTTAC | |
| 69 -------------CCCCTGGCCTTAACCGA------ATTTTTTC-----------CCATC | |
| 70 GATCTAATTCTCC--------------------CCCGCTTAA------------------ | |
| 71 ------------------------------------------------------------ | |
| 72 -------------------------------------- | |
| 73 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1 | |
| 74 TCC--------------------------------------------CTGTTCG------ | |
| 75 ---------------GGCGCCACTGCTAGA------GATTTTCC-----------ACACT | |
| 76 GACTAAAAGGGTCTGA-----------------GGGA---TCTCTAGTTACC-------- | |
| 77 ------------------------------------------------------------ | |
| 78 -------------------------------------- | |
| 79 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1 | |
| 80 ------------------------------------------AGTAAGTAGTACCTGTAA | |
| 81 C--GCAACCTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGT | |
| 82 AGCACTAATAAT------------------------------------------------ | |
| 83 ------------------------------------------------------------ | |
| 84 -------------------------------------- | |
| 85 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1 | |
| 86 ------------------------------------------------------------ | |
| 87 ----CAACCTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGT | |
| 88 AGCAATAATAATAGCAATAG------------TTGAGTGGTC------------------ | |
| 89 ------------------------------------------------------------ | |
| 90 ---------------------------CA--------- | |
| 91 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1 | |
| 92 ACAGTAA------------TTGGAG--------------AGCAATGGCTAGTGATTTTAA | |
| 93 CCTGCCACCTGTAGTAGCAA-AAGAAATAG------TAGCCCG----------------- | |
| 94 ------------------------------------------------------------ | |
| 95 ------------------------------------------------------------ | |
| 96 -------------------------------------- | |
| 97 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1 | |
| 98 ------------------------------------------------------------ | |
| 99 ---------TATGGTACCAGTTAGAGAAAG------AACCCCTA-----------GTAGG | |
| 100 AGCAGAAACCTTCTATGTAG------------ATGGGGCAGC------------------ | |
| 101 ------------------------------------------------------------ | |
| 102 ---------------------------TAACAG----- | |
| 103 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1 | |
| 104 ---------------------------------------------AGTTCATGTATCCAG | |
| 105 T----------GGATATATAGAAGCAGAAG------TTATTCCAGCAGAAACAGGGGCTG | |
| 106 AAACAGCATAT------------------------------------------------- | |
| 107 ------------------------------------------------------------ | |
| 108 -------------------------------------- | |
| 109 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1 | |
| 110 ATTGTACA--------CATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAG | |
| 111 T----------GGATATATAGAAGCAGA-------------------------------- | |
| 112 ------------------------------------------------------------ | |
| 113 ------------------------------------------------------------ | |
| 114 -------------------------------------- | |
| 115 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1 | |
| 116 ------------------------------------------------------------ | |
| 117 --------------TATAAAGACGCAGAAG------TTATTCCAGCATACACAGGGCAGG | |
| 118 AAACAGCATATTTTCTTTT--------------CAAATTAG------------------- | |
| 119 ------------------------------------------------------------ | |
| 120 -----------CAG------------------------ | |
| 121 >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1 | |
| 122 ------------------------------------------------------------ | |
| 123 --------------TGCTAA-----------------------------------TTTTA | |
| 124 AAAGACAATATTCTGTTTC--------------CTGCCCTGTTTCTGCTGGAA------- | |
| 125 ------------------------------------------------------TAACTT | |
| 126 CTGCTTCTATATAT------------------------ | |
| 127 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1 | |
| 128 ------------------------------------------------------------ | |
| 129 --------------GCCA---CAGAGGGAG------CCACACAA-----------TGAAT | |
| 130 GGACACTATAGCTTTTAGAG--GAGCTTAAGAATGAAGCTGTTA---------------- | |
| 131 ------------------------------------------------------------ | |
| 132 ------------------GA------------------ | |
| 133 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1 | |
| 134 ------------------------------------------------------------ | |
| 135 --------------CC--------------------CCATAT------------------ | |
| 136 ---TACTATGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTA------- | |
| 137 ------------------------------------------------------CATCAT | |
| 138 TAG--------------TGT------------------ | |
| 139 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1 | |
| 140 ------------------------------------------------------------ | |
| 141 ----------------------CAGAGGAG------GTCTCT------------------ | |
| 142 ----------------------CGACGCAGGACTCGGCTTGCTGAAGGGCGCA------- | |
| 143 ------------------------------------------------------CGGCAA | |
| 144 GAGGCGAGGGGCGG-CGACT------------------ | |
| 145 >K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1 | |
| 146 ------------------------------------------------------------ | |
| 147 ----------------GGAAACCAGAGGAG------CTCTCT------------------ | |
| 148 ----------------------CGACGCAGGACTCGGCTTGCTGAAGCGCGCA------- | |
| 149 ------------------------------------------------------CGGCAA | |
| 150 GAGGCGAGGGGCG------------------------- | |
| 151 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1 | |
| 152 ------------------------------------------------------------ | |
| 153 --------------TAGGAACCAAAGAAAG------ATAGTT------------------ | |
| 154 ----------------------AAGTGTTTCAATTGTGGCACAGAAGGGCACA------- | |
| 155 ------------------------------------------------------CAGCCA | |
| 156 GAAATTGCAGG--------------------------- | |
| 157 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1 | |
| 158 CTTCTTC-----------------------------TGTTAGTGGTATTACTTCTGTTAG | |
| 159 TGCTTTGGTACCTCTAAGGAGTTTACATAA------TTGCCTTAC--------------- | |
| 160 ------------------------------------------------------------ | |
| 161 ------------------------------------------------------------ | |
| 162 -------------------------------------- | |
| 163 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1 | |
| 164 ------------------------------------------------------------ | |
| 165 ----------------AGGATTTTACATAA------TTGCCTTACTTAAATCCCTGGGTA | |
| 166 AATCTGACTTGCCCAATT---------------CAATTTCCCCA---------------- | |
| 167 -----------------------------------------------------------C | |
| 168 TA------------------------------------ | |
| 169 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1 | |
| 170 ------------------------------------------------------------ | |
| 171 -------------ACTTTATATTTATATAA------TTCACTTCTCCAATTGTCC----- | |
| 172 -----------CTCATCT---------------CTCCTCCTCCAGGTCTGAAG------- | |
| 173 -------------------------------------------------------ATCTC | |
| 174 GG------------------------------------ | |
| 175 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1 | |
| 176 TCTTTGC-----------------------------CTTGGTTGGAGCAACTCCTAATGG | |
| 177 TTGAATTTTTACTACTTTATATTTATATAA------TTCCCTTCT--------------- | |
| 178 ------------------------------------------------------------ | |
| 179 ------------------------------------------------------------ | |
| 180 -------------------------------------- | |
| 181 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1 | |
| 182 ------------------------------------------------------------ | |
| 183 -----------------------TCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTG | |
| 184 GCGCATAGCTCTACAAGC---------------TCCTTGTACTACTTCAATAA------- | |
| 185 ------------------------------------------------------------ | |
| 186 -------------------------------------- | |
| 187 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1 | |
| 188 -----------------------------------------------------------A | |
| 189 CCCATCTTATAGCA-AAATCCTTTCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTG | |
| 190 GCGAATAGCTCTACA--------------------------------------------- | |
| 191 ------------------------------------------------------------ | |
| 192 -------------------------------------- | |
| 193 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1 | |
| 194 ------------------------------------------------------------ | |
| 195 ----------TCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTCTTATGTCCAGAAT | |
| 196 GCTGGTAGGGCT------------------------AT---------ACATTC------- | |
| 197 ------------------------------------------------------------ | |
| 198 -------------------------------------- | |
| 199 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1 | |
| 200 ------------------------------------------------------------ | |
| 201 ----------AATA-GCAATTTGTACAAG-------CAGTTTTAGGCTGACTTCGTGGAT | |
| 202 GCTTCCAGGGCT------------------------CTCGTCTA-GGATCAAC------- | |
| 203 ------------------------------------------------------------ | |
| 204 -------------------------------------- | |
| 205 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1 | |
| 206 ------------------------------------------------------------ | |
| 207 ----------TGTG-TTCAGCTGTACTAT-------TATGGTTATAGCATTTTCCGTGAA | |
| 208 ATTGACAGATCTAATTAC---------------TACCTCTTCT----------------- | |
| 209 ------------------------------------------------------------ | |
| 210 -------------------------------------- | |
| 211 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1 | |
| 212 ------------------------------------------------------------ | |
| 213 ----------------------------------------CTACTATTGCTACTAATGGT | |
| 214 ATAGGTTGCGTTACATGT---------------ACTACTTACTGCTTTGATAGA------ | |
| 215 -----------------------------------------------------GAAGCTT | |
| 216 GAT-----------------------------G----- | |
| 217 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1 | |
| 218 --------------------------------------TCGGAGTCATTGTTGCTATTAC | |
| 219 CACCATCTTTTGTTCATAGCAGCCCTGTAA------TATTTGATT--------------- | |
| 220 ------------------------------------------------------------ | |
| 221 ------------------------------------------------------AACATC | |
| 222 TAA----------------------------------- | |
| 223 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1 | |
| 224 ---------------------------------------------------TTTGATTG- | |
| 225 -ACTAACTCTGATTCACTTTGATCTTGTAG------TGCTTGAAT--------------- | |
| 226 ------------------------------------------------------------ | |
| 227 ------------------------------------------------------GATTCC | |
| 228 TAATGCATAT-----TGTGA----------GTC----- | |
| 229 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1 | |
| 230 -----------------------CGAGCA-----AGCTTCACAGGAGTTAAA-------- | |
| 231 -----------------------AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCG | |
| 232 AACCCAGAT--------------------------------------------------- | |
| 233 ------------------------------------------------------------ | |
| 234 -------------------------------------- | |
| 235 >K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1 | |
| 236 --------------------------------------TCACAGGAGGTAAA-------- | |
| 237 -----------------------AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCG | |
| 238 AACCCAGATTGTAAGA-----------------CTA------------------------ | |
| 239 ------------------------------------------------------------ | |
| 240 -------------------------------------- | |
| 241 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1 | |
| 242 ------------------------------------------------------------ | |
| 243 -------------------------------TGACAGAAACCTAGTTGGTCCAAAATGCG | |
| 244 AACCCAGATTGTAAGA-----------------CAATTTTAAAAGCATTGGGACCAGC-- | |
| 245 ------------------------------------------------------------ | |
| 246 -------------------------------------- | |
| 247 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1 | |
| 248 ------------------------------------------------------------ | |
| 249 ------------------------------------------------------------ | |
| 250 -----------------------------------ATTTTAAAAGCATTGGGACCAGCGG | |
| 251 CTACACTAGAAGAAATGATGACAGCATGTCAGGGAG-------------TAGGATGAC-- | |
| 252 -------------------------------------- | |
| 253 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1 | |
| 254 ------------------------------------------------------------ | |
| 255 ------------------------------------CTACCTCTTCTTCTGCTAGACTGC | |
| 256 C-----------------------------------ATTTAACAGCAGTTGAGTTGATA- | |
| 257 ---------------------------------------------CTACTGGCCTAATTC | |
| 258 CATGT--------------------------GT----- | |
| 259 >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1 | |
| 260 ------------------------------------------------------------ | |
| 261 ----------------------TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGC | |
| 262 A-----------------------------------GTCTAGCAGAAGAAGAGGTAGTA- | |
| 263 ---------------------------------------------AT-------TAGATC | |
| 264 -------------------------------------- | |
| 265 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1 | |
| 266 ---TAACG---------------------------------------------------- | |
| 267 -----------------CCACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGA | |
| 268 AC---AA----------------------------GCCCCAGAAGACGAAGGG------- | |
| 269 ------------------------------------------------------------ | |
| 270 -------------------------------------- | |
| 271 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1 | |
| 272 GTGGAGA----------------------------------------------------- | |
| 273 ------------------------GAGAGACAGAGACAGATCCATTCGATTAGTGAACGG | |
| 274 ATCC----------------------------------TTGGCACTTATCTGGGA----- | |
| 275 ------------------------------------------------------CGATCT | |
| 276 -------------------------------------- | |
| 277 >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1 | |
| 278 TCCGAAGA---------------------------------------------------- | |
| 279 -----------------TCGTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGG | |
| 280 ATCTGA------------------------------CTCTGTCTCT-------------- | |
| 281 ---------------------------------------------------------CTC | |
| 282 -------------------------------------- | |
| 283 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1 | |
| 284 CCAAGTA----------------------------------------------------- | |
| 285 ---------------------TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGG | |
| 286 AGCCAAA----------------------------TCCTAGGAAAATGTCTA-------- | |
| 287 ------------------------------------------------------------ | |
| 288 -------------------------------------- | |
| 289 >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1 | |
| 290 -----TA----------------------------------------------------- | |
| 291 ---------------------TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGG | |
| 292 AGCCAAA----------------------------TCCTAGGAAAATGTCTAAC------ | |
| 293 ---------------------------------------------------------AGC | |
| 294 -------------------------------------- | |
| 295 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1 | |
| 296 ----TGC----------------------------------------------------- | |
| 297 ---------------------TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAA | |
| 298 GGCCATA----------------------------TCTTCCCTAAAAAATTAGC------ | |
| 299 ---------------------------------------------------------CTG | |
| 300 TCT----------------------------------- | |
| 301 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1 | |
| 302 AAGTGCAA---------------------------------------------------- | |
| 303 -----------------------------------GCAATCTGATTCACCCGATTTCTTC | |
| 304 C-----------------------------------AATTATGATGACAGGTGTAGGTC- | |
| 305 ---------------------------------------------CTACTAATACAGT-- | |
| 306 -------------------------------------- | |
| 307 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 | |
| 308 GAT--------------------------------------------------------- | |
| 309 -----------------------------------------------GGTTTTATAGACA | |
| 310 TCA---------------------------------CTATGAAAGCCCTCATCCAAGAAA | |
| 311 -----------------AAGTTCAGAAGTACACA------------------TCCCACTA | |
| 312 GG------------------------------------ | |
| 313 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 | |
| 314 AA---------------------------------------------------------- | |
| 315 --------------------------------------------------TTTATCAAGA | |
| 316 GCC---------------------------------ATTTAAAAATCTGAAAACAGGAAA | |
| 317 -----------------ATATGCAAGAATGAGGGG--------------TGCCCACACTA | |
| 318 AT------------------------------------ | |
| 319 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 | |
| 320 AATTG----TGGGTCACAGTCT--------------ATTATGGGGTACC----------- | |
| 321 -------TGTGTGGC---------AGGAAGCAACCACCACTCTATT-------------- | |
| 322 ------------------------------------------TTGTGCATC--------- | |
| 323 ------------------------------------------------------------ | |
| 324 -------------------------------------- | |
| 325 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 | |
| 326 AGCAGA--ATAGGCGTTACTCG--------------ACAGAGGAGAGCA----------- | |
| 327 -------AGAAATGT---------AGCCAGTAGATCCTAGACTAT--------------- | |
| 328 -------------------------------------------AGCCCTGG--------- | |
| 329 ------------------------------------------------------------ | |
| 330 -------------------------------------- | |
| 331 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 | |
| 332 -------------------------------------------GGAGCT----------- | |
| 333 -------AGAACGAT---------TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAG | |
| 334 GCT---------------------------------GTAGACAAATACTGGGA------- | |
| 335 ------------------------------------------------------------ | |
| 336 -------------------------------------- | |
| 337 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 | |
| 338 ----GAGGGGGAGTTGTTGTCT--------------GTACCCCAGACCT----------- | |
| 339 -------GAAGCTCTCTTCTTGTGGGGCTGTTGGCTCTGGTCTGCT-------------- | |
| 340 ------------------------------------------------------------ | |
| 341 ------------------------------------------------------------ | |
| 342 -------------------------------------- | |
| 343 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 | |
| 344 TTCTGAGGGGGAGATGTTGTCT--------------CTAGCCCAGACCT----------- | |
| 345 -------GAAGCTCTCTTCTGGTGGGGCAGTTGGCTCTGGTC------------------ | |
| 346 ------------------------------------------------------------ | |
| 347 ------------------------------------------------------------ | |
| 348 -------------------------------------- | |
| 349 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 | |
| 350 A------------------------------------------GGGATTATG-------- | |
| 351 ------GAAAACAGA---------TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATG | |
| 352 AGG---------------------------------ATTAGAACATGG------------ | |
| 353 ------------------------------------------------------------ | |
| 354 -------------------------------------- | |
| 355 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 | |
| 356 ------------CGGGCACAC--------------------------------------- | |
| 357 --------ACT--------ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAG | |
| 358 TGG---------------------------------GTTCCCTAG--TTAGC-------- | |
| 359 ------------------------------------------------------------ | |
| 360 -------------------------------------- | |
| 361 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 | |
| 362 ------------------------------------------------------------ | |
| 363 --------------------CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAG | |
| 364 TGG---------------------------------GTTCCCTAG--TTAGCCAGA---- | |
| 365 -----------------------------------------------------GAGCTCC | |
| 366 CA------------------------------------ | |
| 367 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 | |
| 368 ------------------------------------------------------------ | |
| 369 ----------------TGCTGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAG | |
| 370 GCC---------------------------------ATCCAATCACACTACATATT---- | |
| 371 --------------------------------------------------------GACC | |
| 372 AC------------------------------------ | |
| 373 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 | |
| 374 ------------GCTGCTCCC--------------------------------------- | |
| 375 --------ACCCTATCTTGTGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAG | |
| 376 GCC---------------------------------ATCCAATCA--------------- | |
| 377 ------------------------------------------------------------ | |
| 378 -------------------------------------- | |
| 379 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 | |
| 380 ------------------------------------------------------------ | |
| 381 -------------------TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACAC | |
| 382 CCA---------------------------------ATTCTGAAA--CTGGATAAA---- | |
| 383 ---------------------------------------------------CAGCAGTTG | |
| 384 TT------------------------------------ | |
| 385 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 | |
| 386 ------------------------------------------------------------ | |
| 387 ---------------------------------------------------TGCCAAGGA | |
| 388 TCC---------------------------------GTTCACTAA--TCGAATGGA---- | |
| 389 ----------------------TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTC | |
| 390 CT------------------------------------ | |
| 391 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 | |
| 392 ------------------------------------------------------------ | |
| 393 -------------------TTCTGGGAAGTTCAAT----------------TAGGAATAC | |
| 394 CAC---------------------------------ATCCCGCAGGGTTAAAAAAG---- | |
| 395 ----------------------AAAAAATCAGT------------------AACAGTACT | |
| 396 GG------------------------------------ | |
| 397 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 | |
| 398 ------------------------------------------------------------ | |
| 399 -------------------CTATG------TTTAC----------------TTCTAATCC | |
| 400 CGA---------------------------------ATCCTGCAAAGCTAGATAAAT--- | |
| 401 ------------------TGCTTGTAACTCAGTC-----------------TTCTGATTT | |
| 402 GT------------------------------------ | |
| 403 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 | |
| 404 ------------C------ACTTATTAAA-----AGAAAAGGGGGGACTGGA-------- | |
| 405 ------AGGGCTAATTCACTCCCAAAGAAGACAAG----ATATCCTTGATC--------- | |
| 406 ------------------------------------------------------------ | |
| 407 ------------------------------------------------------------ | |
| 408 -------------------------------------- | |
| 409 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 | |
| 410 ------------------------TTAAA-----AGAAAAGGGGGGACTGGA-------- | |
| 411 ------AGGGCTAATTCACTGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA--- | |
| 412 ------------------------------------------------------------ | |
| 413 ------------------------------------------------------------ | |
| 414 -------------------------------------- | |
| 415 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 | |
| 416 ------------------------------------------------------------ | |
| 417 --------GGCTAATTCACTCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGT | |
| 418 ACC---------------------------------ACCCACAAG--------------- | |
| 419 ----------------------------------------------------GCTACTTC | |
| 420 CC------------------------------------ | |
| 421 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 | |
| 422 --------------------------------------ACAACGGAATTGG--------- | |
| 423 --------AGGAAATGAACCAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGT | |
| 424 ACT---------------------------------ATTTTT------------------ | |
| 425 ------------------------------------------------------------ | |
| 426 -------------------------------------- | |
| 427 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 | |
| 428 ----------------------------------------AATAGTACTTT--------- | |
| 429 --------CCTGATTCCAGCACTGACTAAATTATC----TACTTGTTCATTTCCTCCAAT | |
| 430 TCC---------------------------------TTTGTGTG---------------- | |
| 431 ------------------------------------------------------------ | |
| 432 -------------------------------------- | |
| 433 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 | |
| 434 ----------------------------------GAAGAAGCGGAGACAGC--------- | |
| 435 --------GACGAAGAGCTCATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAA | |
| 436 ATC---------------------------------AG---------------------- | |
| 437 ------------------------------------------------------------ | |
| 438 -------------------------------------- | |
| 439 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 | |
| 440 --------------------CTATGGCAG-----GAAGAAGCGGAGACAGC--------- | |
| 441 --------GACGAAGAGCTCATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA---- | |
| 442 ------------------------------------------------------------ | |
| 443 ------------------------------------------------------------ | |
| 444 -------------------------------------- | |
| 445 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 | |
| 446 ----------------------------------------------ACAGC--------- | |
| 447 --------GACGAAGAGCTCATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAA | |
| 448 AGC---------------------------------AGTAAGTA---------------- | |
| 449 -----------------------------------------------------TTACAT- | |
| 450 -------------------------------------- | |
| 451 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 | |
| 452 ------------------------------------------------------------ | |
| 453 --------------------------------------------------------AGCC | |
| 454 ATT---------------------------------GCTCTCCAA--TTACTGTGA---- | |
| 455 ----------------------TATTTCTCATGTTCATCTTGGGCCTT----AACTATTC | |
| 456 CATCTA----------------------AAAAT----- | |
| 457 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1 | |
| 458 ------------------------------------------------------------ | |
| 459 --------------------------------------------------TTATCAGAAG | |
| 460 G------------------------------AGCCACCCCACAAGATTTAAAC------- | |
| 461 ----------------------------------------------------ACCATGCT | |
| 462 ACACCC-------AGTGGGGGGACATCAAGCAGCCA-- | |
| 463 >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1 | |
| 464 ------------------------------------------------------------ | |
| 465 ----------------------------------------GTTTTCAGCATTATCAGAAG | |
| 466 G------------------------------AGCCACCCCACAAGATTTAAAC------- | |
| 467 ----------------------------------------------------ACCATGCT | |
| 468 AAACAC-------AGTGGGGGGACAT------------ | |
| 469 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1 | |
| 470 ------------------------------------------------------------ | |
| 471 ------------------------CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAG | |
| 472 G------------------------------AGCCACCCCACAAGATTTAAAC------- | |
| 473 ----------------------------------------------------ACCATGCT | |
| 474 AAA----------------------------------- | |
| 475 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1 | |
| 476 ------------------------------------------------------------ | |
| 477 ------------------------TGT-------------AACACCTCAGTCATTA---- | |
| 478 --CACAGG--------------CCTGTCCAAAGGTATCCTTTGAGCCAATTCC------- | |
| 479 ----------------------------------------------------CATACATT | |
| 480 ATTGTG-------------------------------- | |
| 481 >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1 | |
| 482 ------------------------------------------------------------ | |
| 483 ------------------------ATG-------------TATG---------------- | |
| 484 -----GGA--------------ATTGGCTGAAAGGATACCTTTGGACAGGCCT------- | |
| 485 ----------------------------------------------------GAGTAATG | |
| 486 ACTGAGGTGTTACAA---------CTTGTC-------- | |
| 487 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1 | |
| 488 ------------------------------------------------------------ | |
| 489 ------------------------AA--------------GCTTGTGTAATTGTTAATTT | |
| 490 C---TCTG--------------TCCCACTCCATCCAGGTCGTGTGATTCCAAC------- | |
| 491 ----------------------------------------------------TCTGTTCC | |
| 492 AG--------------------------AG-------- | |
| 493 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1 | |
| 494 ------------------------------------------------------------ | |
| 495 ------------------------AA--------------AATTTCAAA----------- | |
| 496 -------------------------------AATTGGGCCTGAAAATCCATAC------- | |
| 497 ----------------------------------------------------AATACTCC | |
| 498 AGTATT-TGCCATAAAGAAAAAAGACAGTA-------- | |
| 499 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1 | |
| 500 ------------------------------------------------------------ | |
| 501 ------------------------GC--------------CTGCATGGAATGGATGACCC | |
| 502 GGAGAGAG--------------AAGTGTTAGAGTGGAGGTTTGAGAGCCACCT------- | |
| 503 ----------------------------------------------------AGCAATTC | |
| 504 A------------------------------------- | |
| 505 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1 | |
| 506 ------------------------------------------------------------ | |
| 507 ------------------------GTA-------------CTTTCTATAGTGAATAGAGT | |
| 508 TAGGCAGG--------------TATATTCACCATTATCGTTTGAGACCCACCT------- | |
| 509 ----------------------------------------------------CCCAACCC | |
| 510 -------------------------------------- | |
| 511 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1 | |
| 512 ------------------------------------------------------------ | |
| 513 ----------------------------------------------GGT----------- | |
| 514 -------------------------------GATATGGGCTGATGTACCATTT------- | |
| 515 ----------------------------------------------------GCCCCTGG | |
| 516 ATGTTC-TGCACTATAGGGTAATTTTGGCTGACCTGAT | |
| 517 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1 | |
| 518 ------------------------------------------------------------ | |
| 519 ------------------------ATAGAG----------CTTCCTTTAGTTGCCCCCCT | |
| 520 ATCTTTAT--------------TGTGACGAGGGGACGTTGCCAAAGAGTGACC------- | |
| 521 ----------------------------------------------------TG------ | |
| 522 --------------------AGG--------------- | |
| 523 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1 | |
| 524 ------------------------------------------------------------ | |
| 525 ------------------------------------------------------------ | |
| 526 TTTTTCAG--------------TTCGCTTAGATGAAGACTTCAGGCAGTATAC------- | |
| 527 ----------------------------------------------------TGCATTTA | |
| 528 CCATACCTAGTATAAACAATGAG--------------- | |
| 529 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1 | |
| 530 ------------------------------------------------------------ | |
| 531 -----------------ATAACCACAGAA-----------------AGCATAGTAATATG | |
| 532 G------------------------------GGAAAGACTCCTAAATTTAAACT------ | |
| 533 ---------------------------------------------------GCCCATACA | |
| 534 AAA---------------GGAAACAT------------ | |
| 535 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1 | |
| 536 ------------------------------------------------------------ | |
| 537 --------GACCAGCAAAGCACCTCTGGAA----------AGGTGAAGGGGCAGTAGTAA | |
| 538 TACAAGAT--------------AATAGTGACATAAAAGTAGT------------------ | |
| 539 ------------------------------------------------------------ | |
| 540 -------------------------------------- | |
| 541 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1 | |
| 542 ------------------------------------------------------------ | |
| 543 --------------------------GGAA----------AGGTGAAGGGGCAGTAGTAA | |
| 544 TACAAGAT--------------AATAGTGACATAACAGTAGTG----------------- | |
| 545 ------------------------------------------------------------ | |
| 546 -------------------CGAAGAAGAAAAGCAAA-- | |
| 547 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1 | |
| 548 ------------------------------------------------------------ | |
| 549 -----------------------------------------TTTTATGGTTCATAATCCA | |
| 550 CTCCATGT--------------ACTGGTTCTTTTAGAATCTCTCATTTTTCT-------- | |
| 551 ---------------------------------------------------GCCCGTTCT | |
| 552 AGCT---------------------------------- | |
| 553 >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1 | |
| 554 ------------------------------------------------------------ | |
| 555 ------GAAGCAGAGCTAGAACTGGCAGAA----------AACAGAGAGATTCTAAAATA | |
| 556 ACCAGTAC--------------ATGGAGTGTATTATGACC-------------------- | |
| 557 ------------------------------------------------------------ | |
| 558 -------------------------------------- | |
| 559 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1 | |
| 560 ------------------------------------------------------------ | |
| 561 ------------------------------------------------CTCTAGTGTCCA | |
| 562 TTCATTGT--------------GTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGG------ | |
| 563 ---------------------------------------------------GCTTGTTCC | |
| 564 ATCTCTCCT----------------------------- | |
| 565 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1 | |
| 566 -----------------------------------------------------TGATTTG | |
| 567 TTGTGTCAGTTAGGGTGACAACT------------------TTTTGTGTTCCTCTATTAG | |
| 568 TAACATAT--------------CCTGCTTTTCCTA------------------------- | |
| 569 ------------------------------------------------------------ | |
| 570 -------------------------------------- | |
| 571 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1 | |
| 572 ------------------------------------------------------------ | |
| 573 ---------------------------GAA----------GTCTTGAGTTCTCTTATTAA | |
| 574 --------------------------GTTCTCTGAAATCTACTAATTTTCTCCA------ | |
| 575 ---------------------------------------------------TTTAGTACT | |
| 576 GTCTTTTTTC---------------------------- | |
| 577 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1 | |
| 578 ------------------------------------------------------------ | |
| 579 ------------------------------------------------------------ | |
| 580 ---------------------------TTCTCTGAAATCTACTAATTTTCTCCA------ | |
| 581 ---------------------------------------------------TTTAGTACT | |
| 582 GTCTTTTTTCTTT--ATGGCAAATACTGGAGTATTG-- | |
| 583 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1 | |
| 584 ------------------------------------------------------------ | |
| 585 --------GGGGGGAACAGTGCAGGGGAAA----------GAATAGTAGACATAATAGCA | |
| 586 ACAGACAT--------------ACAAACTAAAGAATTACAA------------------- | |
| 587 ------------------------------------------------------------ | |
| 588 -----------------------------------A-- | |
| 589 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1 | |
| 590 ------------------------------------------------------------ | |
| 591 ------------------------------------------------------------ | |
| 592 -----------------------------TAAGGTGTTTTACTAAACTTTTCCA------ | |
| 593 ---------------------------------------------------TGTTGTAAT | |
| 594 CCTCATCCTGTCTCCTTGCCACACAATCATCACCTG-- | |
| 595 >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1 | |
| 596 ------------------------------------------------------------ | |
| 597 -----------------------------------------CAGGATTAACTGCGAATCT | |
| 598 T---TCTAG------------CTCCCTTGTTGCCCATACTATATGTTTTAATT------- | |
| 599 ----------------------------------------------------TATATTTT | |
| 600 TT--------------------------CT-------T |