Mercurial > repos > dave > pipelign

annotate test-data/files/input.merge.5.fas @ 0:9a3a2e04f47a draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author dave
date Mon, 10 Jun 2019 16:04:10 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
1 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
2 GACCAGCAAAGCACCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
3 TAAAAGTAGT------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
4 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
5 ------------------GGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
6 TAACAGTAGTGCGAAGAAGAAAAGCAAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
7 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
8 --------------------------------------TTTTATGGTTCATAATCCACTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
9 CATGTACTGGTTCTTTTAGAATCTCTCATTTTTCT--GCCCGTTCTAGCT----------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
10 ----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
11 >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
12 -------------GAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAATAACC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
13 AGTACATGGAGTGTATTATGACC-------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
14 ----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
15 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
16 ---------------------------------------------CTCTAGTGTCCATTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
17 ATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTCCATCTCTCCT-----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
18 ----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
19 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
20 TGATTTGTTGTGTCAGTTAGGGTGACAACT--------TTTTGTGTTCCTCTATTAGTAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
21 CATATCCTGCTTTTCCTA------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
22 ----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
23 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
24 ----------------------------------GAAGTCTTGAGTTCTCTTATTAA---
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
25 ---------GTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTC----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
26 ----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
27 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
28 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
29 ----------TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTCTTT-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
30 -ATGGCAAATACTGGAGTATTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
31 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
32 ---------------GGGGGGAACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
33 GACATACAAACTAAAGAATTACAA------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
34 ---------------------A
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
35 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
36 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
37 ------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTCATCCTGTCTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
38 CTTGCCACACAATCATCACCTG