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annotate test-data/files/NODE_17.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1
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2 GAT---------------------------------------------------------
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3 ----------------------------GGTTTTATAGACATCACTATGAAAGCCCTCAT
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4 CCAAGAAAAAGTTCAGAAGTACACA------------------TCCCACTAGG-------
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5 --
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6 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1
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7 AA----------------------------------------------------------
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8 -------------------------------TTTATCAAGAGCCATTTAAAAATCTGAAA
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9 ACAGGAAAATATGCAAGAATGAGGGG--------------TGCCCACACTAAT-------
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10 --
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11 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
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12 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC----
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13 -----AGGAAGCAACCACCACTCTATT-----------------------TTGTGCATC-
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14 ------------------------------------------------------------
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15 --
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16 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
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17 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT----
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18 -----AGCCAGTAGATCCTAGACTAT-------------------------AGCCCTGG-
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19 ------------------------------------------------------------
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20 --
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21 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
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22 --------------------------------------GGAGCT----AGAACGAT----
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23 -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGG
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24 A-----------------------------------------------------------
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25 --
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26 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
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27 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC
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28 TTGTGGGGCTGTTGGCTCTGGTCTGCT---------------------------------
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29 ------------------------------------------------------------
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30 --
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31 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
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32 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC
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33 TGGTGGGGCAGTTGGCTCTGGTC-------------------------------------
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34 ------------------------------------------------------------
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35 --
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36 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
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37 A-------------------------------------GGGATTATGGAAAACAGA----
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38 -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGATTAGAACATGG----
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39 ------------------------------------------------------------
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40 --
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41 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
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42 ------------CGGGCACAC----------------------------ACT--------
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43 ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTAG--TTAGC
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44 ------------------------------------------------------------
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45 --
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46 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
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47 ------------------------------------------------------------
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48 -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAG--TTAGC
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49 CAGA----------------------------------------GAGCTCCCA-------
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50 --
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51 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
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52 ---------------------------------------------------------TGC
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53 TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA
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54 TATT-------------------------------------------GACCAC-------
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55 --
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56 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
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57 ------------GCTGCTCCC----------------------------ACCCTATCTTG
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58 TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCCATCCAATCA-------
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59 ------------------------------------------------------------
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60 --
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61 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
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62 ------------------------------------------------------------
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63 TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCAATTCTGAAA--CTGGA
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64 TAAA--------------------------------------CAGCAGTTGTT-------
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65 --
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66 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
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67 ------------------------------------------------------------
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68 --------------------------------TGCCAAGGATCCGTTCACTAA--TCGAA
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69 TGGA---------TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT-------
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70 --
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71 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
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72 ------------------------------------------------------------
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73 TTCTGGGAAGTTCAAT----------------TAGGAATACCACATCCCGCAGGGTTAAA
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74 AAAG---------AAAAAATCAGT------------------AACAGTACTGG-------
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75 --
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76 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
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77 ------------------------------------------------------------
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78 CTATG------TTTAC----------------TTCTAATCCCGAATCCTGCAAAGCTAGA
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79 TAAAT----TGCTTGTAACTCAGTC-----------------TTCTGATTTGT-------
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80 --
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81 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
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82 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
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83 TCCCAAAGAAGACAAG----ATATCCTTGATC----------------------------
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84 ------------------------------------------------------------
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85 --
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86 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
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87 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
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88 TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA----------------------
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89 ------------------------------------------------------------
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90 --
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91 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
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92 -------------------------------------------------GGCTAATTCAC
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93 TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACCACCCACAAG-------
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94 -------------------------------------------GCTACTTCCC-------
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95 --
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96 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
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97 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC
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98 CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACTATTTTT----------
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99 ------------------------------------------------------------
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100 --
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101 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
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102 -----------------------------------AATAGTACTTT---CCTGATTCCAG
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103 CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCCTTTGTGTG--------
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104 ------------------------------------------------------------
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105 --
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106 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
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107 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT
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108 CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATCAG--------------
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109 ------------------------------------------------------------
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110 --
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111 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
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112 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT
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113 CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA-----------------------
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114 ------------------------------------------------------------
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115 --
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116 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
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117 -----------------------------------------ACAGC---GACGAAGAGCT
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118 CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGCAGTAAGTA--------
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119 --------------------------------------------TTACAT----------
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120 --
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121 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1
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122 ------------------------------------------------------------
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123 -------------------------------------AGCCATTGCTCTCCAA--TTACT
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124 GTGA---------TATTTCTCATGTTCATCTTGGGCCTT----AACTATTCCATCTAAAA
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125 AT