Mercurial > repos > dave > abayesqr

changeset 3:67a11eca10f1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abayesqr commit f009487e8fec49f10396185ffd2fc4fe65bf4f29-dirty
author dave
date Wed, 20 Mar 2019 15:31:34 -0400
parents d2aa2a22721d
children
files parse_output.py
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/parse_output.py	Wed Mar 20 14:28:32 2019 -0400
+++ b/parse_output.py	Wed Mar 20 15:31:34 2019 -0400
@@ -1,10 +1,11 @@
 import os
+print(os.getcwd())
 from Bio.Seq import Seq
 from Bio.SeqRecord import SeqRecord
 from Bio import SeqIO
 
 def parse_abayesqr_output(input_text, output_fasta):
-    wd = os.getcwd()
+    wd = os.path.join(os.getcwd(), 'working')
     with open(os.path.join(wd, input_text)) as input_file:
         lines = input_file.readlines()
     records = []