# HG changeset patch
# User dave
# Date 1553110294 14400
# Node ID 67a11eca10f1df29b8d41481e8f9625110a91a4d
# Parent  d2aa2a22721de69e24309603d7f4c0b009cf5c4a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abayesqr commit f009487e8fec49f10396185ffd2fc4fe65bf4f29-dirty

diff -r d2aa2a22721d -r 67a11eca10f1 parse_output.py
--- a/parse_output.py	Wed Mar 20 14:28:32 2019 -0400
+++ b/parse_output.py	Wed Mar 20 15:31:34 2019 -0400
@@ -1,10 +1,11 @@
 import os
+print(os.getcwd())
 from Bio.Seq import Seq
 from Bio.SeqRecord import SeqRecord
 from Bio import SeqIO
 
 def parse_abayesqr_output(input_text, output_fasta):
-    wd = os.getcwd()
+    wd = os.path.join(os.getcwd(), 'working')
     with open(os.path.join(wd, input_text)) as input_file:
         lines = input_file.readlines()
     records = []