# HG changeset patch
# User da-intersect
# Date 1367886640 14400
# Node ID b14efb6e55e3d1a3d4b8a7675ed2302579187e7f
# Parent  4bb42c46e81dba6a72150a6432f0f29cde0ba360
Uploaded

diff -r 4bb42c46e81d -r b14efb6e55e3 protein_generator.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/protein_generator.sh	Mon May 06 20:30:40 2013 -0400
@@ -0,0 +1,25 @@
+#!/bin/bash
+
+if (type -p java >> /dev/null); then
+    _java=java
+elif [[ -n "$JAVA_HOME" ]] && [[ -x "$JAVA_HOME/bin/java" ]];  then
+    _java="$JAVA_HOME/bin/java"
+else
+    echo "You must install java before runing this tool" >&2
+    exit 1
+fi
+
+if [[ "$_java" ]]; then
+    version=$("$_java" -version 2>&1 | awk -F '"' '/version/ {print $2}')
+    if ! [[ "$version" > "1.6" ]]; then
+        echo "Java version should be > 1.6" >&2
+	exit 1
+    fi
+fi
+
+DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
+
+jar_path="${DIR}/${1}"
+shift
+
+java -Xmx3072M -jar $jar_path $@