Mercurial > repos > da-intersect > test_ap11

diff protein_generator.sh @ 0:b04c42cb2d31
Uploaded tools v1.0.1 and datatypes.
author: da-intersect
date: Wed, 10 Apr 2013 21:20:41 -0400
children: caf9e5b5a326
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/protein_generator.sh	Wed Apr 10 21:20:41 2013 -0400
@@ -0,0 +1,25 @@
+#!/bin/bash
+
+if (type -p java >> /dev/null); then
+    _java=java
+elif [[ -n "$JAVA_HOME" ]] && [[ -x "$JAVA_HOME/bin/java" ]];  then
+    _java="$JAVA_HOME/bin/java"
+else
+    echo "You must install java before runing this tool" >&2
+    exit 1
+fi
+
+if [[ "$_java" ]]; then
+    version=$("$_java" -version 2>&1 | awk -F '"' '/version/ {print $2}')
+    if ! [[ "$version" > "1.6" ]]; then
+        echo "Java version should be > 1.6" >&2
+	exit 1
+    fi
+fi
+
+DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
+
+jar_path="${DIR}/jars/${1}"
+shift
+
+java -jar $jar_path $@