Mercurial > repos > da-intersect > test_ap11
comparison tar.py @ 7:1581c2d80588
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author | da-intersect |
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date | Thu, 11 Apr 2013 01:28:30 -0400 |
parents | |
children | 3cff57242c39 |
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6:f4d22153aed1 | 7:1581c2d80588 |
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1 import data, logging, binascii | |
2 from galaxy.datatypes.metadata import MetadataElement | |
3 from galaxy.datatypes import metadata | |
4 from galaxy.datatypes.sniff import * | |
5 from galaxy import eggs | |
6 import pkg_resources | |
7 pkg_resources.require( "bx-python" ) | |
8 from urllib import urlencode, quote_plus | |
9 import zipfile, gzip | |
10 import os, subprocess, tempfile, tarfile | |
11 import struct | |
12 | |
13 class Tar( Binary ): | |
14 """Class describing a BAM binary file""" | |
15 file_ext = "tar" | |
16 def sniff( self, filename ): | |
17 try: | |
18 if tarfile.is_tarfile(filename): | |
19 return True | |
20 except: | |
21 return False | |
22 | |
23 def set_peek( self, dataset, is_multi_byte=False ): | |
24 if not dataset.dataset.purged: | |
25 dataset.peek = "Tar file" | |
26 dataset.blurb = data.nice_size( dataset.get_size() ) | |
27 else: | |
28 dataset.peek = 'file does not exist' | |
29 dataset.blurb = 'file purged from disk' | |
30 | |
31 def display_peek( self, dataset ): | |
32 try: | |
33 return dataset.peek | |
34 except: | |
35 return "Tar file (%s)" % ( data.nice_size( dataset.get_size() ) ) | |
36 |