annotate tar.py @ 46:739bf5324d63 default tip

Merge heads at 34:55f937f289b2 and 45:b5b253a92efe which were created as a result of a recently fixed bug.
author devteam <devteam@galaxyproject.org>
date Mon, 13 Jan 2014 12:45:44 -0500
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1 from galaxy.datatypes import data
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2 from galaxy.datatypes.metadata import MetadataElement
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3 from galaxy.datatypes.binary import Binary
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4 from galaxy.datatypes import metadata
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5 from galaxy.datatypes.sniff import *
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6 import tarfile
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7
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8 class Tar( Binary ):
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9 """Class describing a BAM binary file"""
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10 file_ext = "tar"
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11 def sniff( self, filename ):
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12 try:
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13 if tarfile.is_tarfile(filename):
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14 return True
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15 except:
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16 return False
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17
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18 def set_peek( self, dataset, is_multi_byte=False ):
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19 if not dataset.dataset.purged:
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20 dataset.peek = "Tar file"
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21 dataset.blurb = data.nice_size( dataset.get_size() )
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22 else:
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23 dataset.peek = 'file does not exist'
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24 dataset.blurb = 'file purged from disk'
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25
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26 def display_peek( self, dataset ):
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27 try:
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28 return dataset.peek
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29 except:
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30 return "Tar file"