annotate tar.py @ 8:3cff57242c39

Uploaded
author da-intersect
date Thu, 11 Apr 2013 01:38:56 -0400
parents 1581c2d80588
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
7
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
1 from galaxy.datatypes.metadata import MetadataElement
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
2 from galaxy.datatypes import metadata
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
3 from galaxy.datatypes.sniff import *
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
4 from galaxy import eggs
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
5 import pkg_resources
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
6 pkg_resources.require( "bx-python" )
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
7 from urllib import urlencode, quote_plus
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
8 import zipfile, gzip
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
9 import os, subprocess, tempfile, tarfile
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
10 import struct
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
11
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
12 class Tar( Binary ):
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
13 """Class describing a BAM binary file"""
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
14 file_ext = "tar"
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
15 def sniff( self, filename ):
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
16 try:
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
17 if tarfile.is_tarfile(filename):
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
18 return True
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
19 except:
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
20 return False
1581c2d80588 Uploaded
da-intersect
parents:
diff changeset
21