diff samifier.sh @ 6:aa37ac3a0539 draft default tip

Deleted selected files

--- a/samifier.sh	Wed Apr 10 02:41:02 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,39 +0,0 @@
-#!/bin/bash
-
-if (type -p java >> /dev/null); then
-    _java=java
-elif [[ -n "$JAVA_HOME" ]] && [[ -x "$JAVA_HOME/bin/java" ]];  then
-    _java="$JAVA_HOME/bin/java"
-else
-    echo "You must install java before runing this tool"
-    exit 1
-fi
-
-if [[ "$_java" ]]; then
-    version=$("$_java" -version 2>&1 | awk -F '"' '/version/ {print $2}')
-    if ! [[ "$version" > "1.6" ]]; then
-        echo "Java version should be > 1.6"
-	exit 1
-    fi
-fi
-
-if [ $# -eq 0 ]
-then
-  echo "USAGE ap11Runner.sh APPNAME [ARGS]";
-  exit;
-fi
-
-DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
-
-jar_path="${DIR}/jars/${1}"
-chr_path="${DIR}/chromosome"
-shift
-tar_file="$1"
-shift
-temp_dir=$(basename "$tar_file")
-
-mkdir -p /tmp/$temp_dir
-
-tar -C /tmp/$temp_dir -xvf $tar_file
-java -jar $jar_path $@ -c "/tmp/$temp_dir"
-rm -rf "/tmp/$temp_dir"