# HG changeset patch
# User czouaoui
# Date 1521537141 14400
# Node ID d2f523789a27bf2cab198297890ec04134baae26
# Parent  444ccbbe5d490e14675e82746b5e6fe44aa7be3c
Uploaded

diff -r 444ccbbe5d49 -r d2f523789a27 abundanceTable_to_biom/abundanceTable_to_biom.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/abundanceTable_to_biom/abundanceTable_to_biom.xml	Tue Mar 20 05:12:21 2018 -0400
@@ -0,0 +1,22 @@
+<tool id="abundanceTable_to_biom" name="Converting abundance tables to Biom files (v1.0)" version="0.1.0">
+    <command detect_errors="exit_code"><![CDATA[
+        python $__tool_directory__/abundanceTable_to_biom.py --file $input --out_name biom_result
+    ]]></command>
+    <inputs>
+        <param type="data" name="input" format="csv" label="Abundance table"/>
+    </inputs>
+    <outputs>
+        <data name= "output" format="biom1" label="${input.name} to Biom (v1.0)" from_work_dir="biom_result.biom"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" format="csv" value="merge_summary_reads.csv"/>
+            <output name="output" format="biom1" file="biom_result.biom"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+        This tool is used to generate a Biom file (v1.0) from an abundance table. 
+	The first column of the header is a taxonomy list (families). Next columns contain sample ids.
+	The abundancy of reads is set inside the table. 
+    ]]></help>
+</tool>