Mercurial > repos > cwallon > detr_prok_v2
changeset 0:4676865b9a99 draft default tip
Uploaded
| author | cwallon |
|---|---|
| date | Mon, 04 Mar 2013 05:09:20 -0500 |
| parents | |
| children | |
| files | Galaxy-Workflow-_DetR_Prok_v2__.ga |
| diffstat | 1 files changed, 1299 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-_DetR_Prok_v2__.ga Mon Mar 04 05:09:20 2013 -0500 @@ -0,0 +1,1299 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "This workflow aims at identify 3 kinds of ncRNA in prokaryotic sequences. \n\nIt need as entries the alignment file of reads on a genomic sequence (bam format) and the annotation file of the genomic sequence (gff format).", + "format-version": "0.1", + "name": "\"DetR'Prok_v2''", + "steps": { + "0": { + "annotation": "The annotations file you have to import here concerns the coding genes, tRNA, rRNA, and all already known ncRNA. You can download it from GJI (http://genome.jgi.doe.gov) or NCBI. Caution that the 1srt column has exactly the same identifier than the genome sequence used for reads mapping.", + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "The annotations file you have to import here concerns the coding genes, tRNA, rRNA, and all already known ncRNA. You can download it from GJI (http://genome.jgi.doe.gov) or NCBI. Caution that the 1srt column has exactly the same identifier than the genome sequence used for reads mapping.", + "name": "positions list of all genome known annotations" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 216.89999389648438, + "top": 301.2833251953125 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"positions list of all genome known annotations\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "1": { + "annotation": "Here you have to import a resulting bam file coming from an alignment, or mapping, of reads on the genome sequence. \nYou may use bowtie (or another mapper) to realise this mapping step (keep only unique map).", + "id": 1, + "input_connections": {}, + "inputs": [ + { + "description": "Here you have to import a resulting bam file coming from an alignment, or mapping, of reads on the genome sequence. \nYou may use bowtie (or another mapper) to realise this mapping step (keep only unique map).", + "name": "read alignments on genome" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 209.89999389648438, + "top": 464.5166473388672 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"read alignments on genome\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "2": { + "annotation": "In box specify the reads size in nt", + "id": 2, + "input_connections": {}, + "inputs": [ + { + "description": "runtime parameter for tool ask reads size", + "name": "readsSize" + } + ], + "name": "ask reads size", + "outputs": [ + { + "name": "outputFile", + "type": "txt" + } + ], + "position": { + "left": 252.51666259765625, + "top": 538.1333465576172 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "askReadsSize", + "tool_state": "{\"__page__\": 0, \"readsSize\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", + "tool_version": "0.0.0", + "type": "tool", + "user_outputs": [] + }, + "3": { + "annotation": "", + "id": 3, + "input_connections": { + "inputFile": { + "id": 0, + "output_name": "output" + } + }, + "inputs": [], + "name": "clean Gff", + "outputs": [ + { + "name": "outputFile", + "type": "gff3" + } + ], + "position": { + "left": 353.1166687011719, + "top": 362.6166534423828 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/cleanGff/1.0.0", + "tool_state": "{\"__page__\": 0, \"type\": \"\\\"tRNA,rRNA,ncRNA,CDS\\\"\", \"inputFile\": \"null\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "4": { + "annotation": "Technical step (format change).", + "id": 4, + "input_connections": { + "input1": { + "id": 1, + "output_name": "output" + } + }, + "inputs": [], + "name": "BAM-to-SAM", + "outputs": [ + { + "name": "output1", + "type": "sam" + } + ], + "position": { + "left": 418.66668701171875, + "top": 463.5166473388672 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "bam_to_sam", + "tool_state": "{\"header\": \"\\\"False\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/share/apps/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"__page__\": 0}", + "tool_version": "1.0.3", + "type": "tool", + "user_outputs": [] + }, + "5": { + "annotation": "In box specify the maximal intergenique distance to define operon. This distance depends on the gene density of the organism (ex. 30 for Escherichia coli, 150 for Vibrio splendidus)", + "id": 5, + "input_connections": { + "formatType|inputFileName": { + "id": 3, + "output_name": "outputFile" + } + }, + "inputs": [ + { + "description": "runtime parameter for tool Clusterize", + "name": "distance" + } + ], + "name": "Clusterize", + "outputs": [ + { + "name": "outputFileGff", + "type": "gff3" + }, + { + "name": "outputFileLog", + "type": "txt" + } + ], + "position": { + "left": 512.0166625976562, + "top": 284.2333221435547 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/MergingDataClusterize/1.0.0", + "tool_state": "{\"normalize\": \"\\\"False\\\"\", \"__page__\": 0, \"formatType\": \"{\\\"inputFileName\\\": null, \\\"__current_case__\\\": 3, \\\"FormatInputFileName\\\": \\\"gff3\\\"}\", \"log\": \"\\\"False\\\"\", \"distance\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"colinear\": \"\\\"True\\\"\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "6": { + "annotation": "Association of collinear overlapping reads giving read clusters.", + "id": 6, + "input_connections": { + "formatType|inputFileName": { + "id": 4, + "output_name": "output1" + } + }, + "inputs": [], + "name": "Clusterize", + "outputs": [ + { + "name": "outputFileGff", + "type": "gff3" + }, + { + "name": "outputFileLog", + "type": "txt" + } + ], + "position": { + "left": 440.433349609375, + "top": 593.5166473388672 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/MergingDataClusterize/1.0.0", + "tool_state": "{\"normalize\": \"\\\"False\\\"\", \"distance\": \"\\\"0\\\"\", \"formatType\": \"{\\\"inputFileName\\\": null, \\\"__current_case__\\\": 5, \\\"FormatInputFileName\\\": \\\"sam\\\"}\", \"log\": \"\\\"False\\\"\", \"__page__\": 0, \"colinear\": \"\\\"True\\\"\", \"chromInfo\": \"\\\"/share/apps/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "7": { + "annotation": "Selection of read clusters that overlap the annotations (collinear stackings). In box, specify a maximal distance to associate read clusters with annotation (ex. a distance of 15 nt will associate a read cluster to an annotation even if they are distants of 15 nt).", + "id": 7, + "input_connections": { + "formatType2|inputFileName2": { + "id": 5, + "output_name": "outputFileGff" + }, + "formatType|inputFileName1": { + "id": 6, + "output_name": "outputFileGff" + } + }, + "inputs": [ + { + "description": "runtime parameter for tool Compare Overlapping Small Query", + "name": "OptionDistance" + } + ], + "name": "Compare Overlapping Small Query", + "outputs": [ + { + "name": "outputFileGff", + "type": "gff3" + } + ], + "position": { + "left": 655.2000122070312, + "top": 417.5166473388672 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallQuery/1.0.0", + "tool_state": "{\"OptionInclusionQuery\": \"\\\"False\\\"\", \"NotOverlapping\": \"\\\"False\\\"\", \"formatType\": \"{\\\"FormatInputFileName1\\\": \\\"gff3\\\", \\\"inputFileName1\\\": null, \\\"__current_case__\\\": 3}\", \"InvertMatch\": \"\\\"False\\\"\", \"__page__\": 0, \"OptionInclusionRef\": \"\\\"False\\\"\", \"OptionDistance\": \"{\\\"distance\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"Dist\\\": \\\"Yes\\\", \\\"__current_case__\\\": 0}\", \"formatType2\": \"{\\\"FormatInputFileName2\\\": \\\"gff\\\", \\\"inputFileName2\\\": null, \\\"__current_case__\\\": 1}\", \"OptionPcOverlapQuery\": \"{\\\"present\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"OptionMinOverlap\": \"{\\\"present\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"OptionCollinearOrAntiSens\": \"{\\\"__current_case__\\\": 0, \\\"OptionCA\\\": \\\"Collinear\\\"}\", \"OptionPcOverlapRef\": \"{\\\"present\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "8": { + "annotation": "Selection of read clusters that are outside of the annotations (collinear stackings and invert selection). In box, specify th same maximal distance to associate read clusters with annotation than the previous step (ex. a distance of 15 nt will associate a read cluster to an annotation even if they are distants of 15 nt).", + "id": 8, + "input_connections": { + "formatType2|inputFileName2": { + "id": 5, + "output_name": "outputFileGff" + }, + "formatType|inputFileName1": { + "id": 6, + "output_name": "outputFileGff" + } + }, + "inputs": [ + { + "description": "runtime parameter for tool Compare Overlapping Small Query", + "name": "OptionDistance" + } + ], + "name": "Compare Overlapping Small Query", + "outputs": [ + { + "name": "outputFileGff", + "type": "gff3" + } + ], + "position": { + "left": 742.2000122070312, + "top": 572.2833099365234 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallQuery/1.0.0", + "tool_state": "{\"OptionInclusionQuery\": \"\\\"False\\\"\", \"NotOverlapping\": \"\\\"False\\\"\", \"formatType\": \"{\\\"FormatInputFileName1\\\": \\\"gff3\\\", \\\"inputFileName1\\\": null, \\\"__current_case__\\\": 3}\", \"InvertMatch\": \"\\\"True\\\"\", \"__page__\": 0, \"OptionInclusionRef\": \"\\\"False\\\"\", \"OptionDistance\": \"{\\\"distance\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"Dist\\\": \\\"Yes\\\", \\\"__current_case__\\\": 0}\", \"formatType2\": \"{\\\"FormatInputFileName2\\\": \\\"gff\\\", \\\"inputFileName2\\\": null, \\\"__current_case__\\\": 1}\", \"OptionPcOverlapQuery\": \"{\\\"present\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"OptionMinOverlap\": \"{\\\"present\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"OptionCollinearOrAntiSens\": \"{\\\"__current_case__\\\": 0, \\\"OptionCA\\\": \\\"Collinear\\\"}\", \"OptionPcOverlapRef\": \"{\\\"present\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "9": { + "annotation": "Technical step: fusing of two files, annotations and read clusters that overlap annotation, in order to define transcription units by clustering them.", + "id": 9, + "input_connections": { + "input1": { + "id": 5, + "output_name": "outputFileGff" + }, + "queries_0|input2": { + "id": 7, + "output_name": "outputFileGff" + } + }, + "inputs": [], + "name": "Concatenate datasets", + "outputs": [ + { + "name": "out_file1", + "type": "input" + } + ], + "position": { + "left": 819.9666748046875, + "top": 278.51666259765625 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "cat1", + "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/share/apps/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"queries\": \"[{\\\"input2\\\": null, \\\"__index__\\\": 0}]\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "10": { + "annotation": "Collinear clustering of annotations and read clusters that overlap them. In box specify the same maximal distance than you gave in previous steps (ex. a distance of 15 nt will associate a read cluster to an annotation even if they are distants of 15 nt). This step defines transcription units.", + "id": 10, + "input_connections": { + "formatType|inputFileName": { + "id": 9, + "output_name": "out_file1" + } + }, + "inputs": [ + { + "description": "runtime parameter for tool Clusterize", + "name": "distance" + } + ], + "name": "Clusterize", + "outputs": [ + { + "name": "outputFileGff", + "type": "gff3" + }, + { + "name": "outputFileLog", + "type": "txt" + } + ], + "position": { + "left": 1036.7333984375, + "top": 291.51666259765625 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/MergingDataClusterize/1.0.0", + "tool_state": "{\"normalize\": \"\\\"False\\\"\", \"distance\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"formatType\": \"{\\\"inputFileName\\\": null, \\\"__current_case__\\\": 3, \\\"FormatInputFileName\\\": \\\"gff3\\\"}\", \"log\": \"\\\"False\\\"\", \"__page__\": 0, \"colinear\": \"\\\"True\\\"\", \"chromInfo\": \"\\\"/share/apps/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "11": { + "annotation": "Technical step: suppress \"exon\" features created by the use of the distance option in the previous clustering step.", + "id": 11, + "input_connections": { + "input": { + "id": 10, + "output_name": "outputFileGff" + } + }, + "inputs": [], + "name": "Select", + "outputs": [ + { + "name": "out_file1", + "type": "input" + } + ], + "position": { + "left": 1232.5, + "top": 303.51666259765625 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "Grep1", + "tool_state": "{\"__page__\": 0, \"input\": \"null\", \"invert\": \"\\\"true\\\"\", \"chromInfo\": \"\\\"/share/apps/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"pattern\": \"\\\"exon\\\"\"}", + "tool_version": "1.0.1", + "type": "tool", + "user_outputs": [] + }, + "12": { + "annotation": "List of transcription units (ordered by increasing positions).", + "id": 12, + "input_connections": { + "formatType|inputFileName": { + "id": 11, + "output_name": "out_file1" + } + }, + "inputs": [], + "name": "collapse reads", + "outputs": [ + { + "name": "outputFileGff", + "type": "gff3" + } + ], + "position": { + "left": 973.2666625976562, + "top": 444.5166473388672 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/collapseReads/1.0.0", + "tool_state": "{\"__page__\": 0, \"formatType\": \"{\\\"inputFileName\\\": null, \\\"__current_case__\\\": 3, \\\"FormatInputFileName\\\": \\\"gff3\\\"}\", \"chromInfo\": \"\\\"/share/apps/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"strand\": \"\\\"False\\\"\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "13": { + "annotation": "Split transcription units in UTRs, CDS and/or operon spacers.", + "id": 13, + "input_connections": { + "referenciesFile": { + "id": 5, + "output_name": "outputFileGff" + }, + "transcriptsFile": { + "id": 12, + "output_name": "outputFileGff" + } + }, + "inputs": [], + "name": "splitTranscriptGff", + "outputs": [ + { + "name": "outputFile", + "type": "gff3" + } + ], + "position": { + "left": 1228.0333251953125, + "top": 431.5166473388672 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "splitTranscriptGff", + "tool_state": "{\"transcriptsFile\": \"null\", \"__page__\": 0, \"chromInfo\": \"\\\"/share/apps/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"referenciesFile\": \"null\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "14": { + "annotation": "Selection of read clusters that are outside and not in antisense of the annotations (complementary selection, \"invert match\", of an antisense stackings of read clusters and annotations ; use a strict inclusion by indicating that 100% of the query must overlap). This step constitute the fisrt list of small ncRNA.", + "id": 14, + "input_connections": { + "formatType2|inputFileName2": { + "id": 12, + "output_name": "outputFileGff" + }, + "formatType|inputFileName1": { + "id": 8, + "output_name": "outputFileGff" + } + }, + "inputs": [], + "name": "Compare Overlapping Small Query", + "outputs": [ + { + "name": "outputFileGff", + "type": "gff3" + } + ], + "position": { + "left": 1068.0333251953125, + "top": 750.0499725341797 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallQuery/1.0.0", + "tool_state": "{\"OptionInclusionQuery\": \"\\\"False\\\"\", \"NotOverlapping\": \"\\\"False\\\"\", \"formatType\": \"{\\\"FormatInputFileName1\\\": \\\"gff3\\\", \\\"inputFileName1\\\": null, \\\"__current_case__\\\": 3}\", \"InvertMatch\": \"\\\"True\\\"\", \"__page__\": 0, \"OptionInclusionRef\": \"\\\"False\\\"\", \"OptionDistance\": \"{\\\"Dist\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"formatType2\": \"{\\\"FormatInputFileName2\\\": \\\"gff3\\\", \\\"inputFileName2\\\": null, \\\"__current_case__\\\": 3}\", \"OptionPcOverlapQuery\": \"{\\\"present\\\": \\\"Yes\\\", \\\"__current_case__\\\": 0, \\\"minOverlap\\\": \\\"100\\\"}\", \"OptionMinOverlap\": \"{\\\"present\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"OptionCollinearOrAntiSens\": \"{\\\"__current_case__\\\": 1, \\\"OptionCA\\\": \\\"AntiSens\\\"}\", \"OptionPcOverlapRef\": \"{\\\"present\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "15": { + "annotation": "Selection of read clusters that are both outside and in antisense of the annotations (antisense stackings of read clusters and annotations ; use a strict inclusion by indicating that 100% of the query must overlap).", + "id": 15, + "input_connections": { + "formatType2|inputFileName2": { + "id": 12, + "output_name": "outputFileGff" + }, + "formatType|inputFileName1": { + "id": 8, + "output_name": "outputFileGff" + } + }, + "inputs": [], + "name": "Compare Overlapping Small Query", + "outputs": [ + { + "name": "outputFileGff", + "type": "gff3" + } + ], + "position": { + "left": 1170.0333251953125, + "top": 602.2833099365234 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallQuery/1.0.0", + "tool_state": "{\"OptionInclusionQuery\": \"\\\"False\\\"\", \"NotOverlapping\": \"\\\"False\\\"\", \"formatType\": \"{\\\"FormatInputFileName1\\\": \\\"gff3\\\", \\\"inputFileName1\\\": null, \\\"__current_case__\\\": 3}\", \"InvertMatch\": \"\\\"False\\\"\", \"__page__\": 0, \"OptionInclusionRef\": \"\\\"False\\\"\", \"OptionDistance\": \"{\\\"Dist\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"formatType2\": \"{\\\"FormatInputFileName2\\\": \\\"gff3\\\", \\\"inputFileName2\\\": null, \\\"__current_case__\\\": 3}\", \"OptionPcOverlapQuery\": \"{\\\"present\\\": \\\"Yes\\\", \\\"__current_case__\\\": 0, \\\"minOverlap\\\": \\\"100\\\"}\", \"OptionMinOverlap\": \"{\\\"present\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"OptionCollinearOrAntiSens\": \"{\\\"__current_case__\\\": 1, \\\"OptionCA\\\": \\\"AntiSens\\\"}\", \"OptionPcOverlapRef\": \"{\\\"present\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "16": { + "annotation": "Collinear crossing of reads with UTRs, CDS and/or operon spacers in order to compute their read coverage (with a minimal overlapping region of 10 nt between read and genetic element). \nAiming at caracterize ncRNA, this workflow will next only focuses on 5'UTR, but you may use the output file of this step in order to exploit the read coverage of other elements like 3'UTR, CDS, or operon spacers.", + "id": 16, + "input_connections": { + "formatType2|inputFileName2": { + "id": 4, + "output_name": "output1" + }, + "formatType|inputFileName1": { + "id": 13, + "output_name": "outputFile" + } + }, + "inputs": [], + "name": "Compare Overlapping Small Reference", + "outputs": [ + { + "name": "outputFileGff", + "type": "gff3" + } + ], + "position": { + "left": 1443.800048828125, + "top": 488.5166473388672 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallRef/1.0.0", + "tool_state": "{\"OptionInclusionQuery\": \"\\\"False\\\"\", \"NotOverlapping\": \"\\\"False\\\"\", \"formatType\": \"{\\\"FormatInputFileName1\\\": \\\"gff3\\\", \\\"inputFileName1\\\": null, \\\"__current_case__\\\": 3}\", \"InvertMatch\": \"\\\"False\\\"\", \"__page__\": 0, \"OptionInclusionRef\": \"\\\"False\\\"\", \"OptionDistance\": \"{\\\"Dist\\\": \\\"No\\\", \\\"__current_case__\\\": 1}\", \"formatType2\": \"{\\\"FormatInputFileName2\\\": \\\"sam\\\", \\\"inputFileName2\\\": null, \\\"__current_case__\\\": 4}\", \"OptionPcOverlapQuery\": 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