Mercurial > repos > cschu > candisnp
view candisnp.xml @ 2:43710158b0fa draft
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author | cschu |
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date | Fri, 22 May 2015 13:34:55 -0400 |
parents | 36f6520671b3 |
children | 9215ffe7d4d5 |
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<tool id="candisnp" name="candisnp"> <description></description> <requirements> <requirement type="package" version="2.7.4">python</requirement> <requirement type="package" version="4.0">snpEff</requirement> </requirements> <command interpreter="python">candisnp.py #if $snpDb.genomeSrc == 'cached': --ref="${snpDb.genomeVersion.fields.key}" #end if $input $candisnp_html </command> <inputs> <param format="vcf" name="input" type="data" label="snpEff output"/> <conditional name="snpDb"> <param name="genomeSrc" type="select" label="Genome source"> <option value="cached">Locally installed reference genome</option> </param> <when value="cached"> <param name="genomeVersion" type="select" label="Genome"> <!-- GENOME DESCRIPTION --> <options from_data_table="snpeffv_genomedb"> <!-- <filter type="static_value" name="snpeff_version" value="@SNPEFF_VERSION@" column="1"/> --> <filter type="unique_value" column="2"/> </options> </param> </when> </conditional> </inputs> <outputs> <data format="html" name="candisnp_html" label="${tool.name}" /> </outputs> <help> This tool is a testtool to issue POST requests from Galaxy. </help> </tool>