# HG changeset patch
# User Michael R. Crusoe <mcrusoe@msu.edu>
# Date 1404079862 14400
# Node ID 7611b274ed676ec4efd52ee91a65d506c7462e95
# Parent  d067ee2824123959ec6b8f2bb4fe68c67ddf4a0d
Specify filetypes

diff -r d067ee282412 -r 7611b274ed67 abundance-dist.xml
--- a/abundance-dist.xml	Sun Jun 29 17:52:24 2014 -0400
+++ b/abundance-dist.xml	Sun Jun 29 18:11:02 2014 -0400
@@ -40,7 +40,7 @@
 	<tests>
 		<test>
                     	<param name="input_sequence_filename" value="test-abund-read-2.fa" />
-			<param name="input_counting_table_filename" value="test-abund-read-2.ct" />
+			<param name="input_counting_table_filename" value="test-abund-read-2.ct" ftype="ct" />
 			<param name="no_zero" value="false" />
                     	<output name="output_histogram_filename">
 				<assert_contents>
@@ -51,7 +51,7 @@
 		</test>
 		<test>
                     	<param name="input_sequence_filename" value="test-abund-read-2.fa" />
- 			<param name="input_counting_table_filename" value="test-abund-read-2.nobigcount.ct" />
+ 			<param name="input_counting_table_filename" value="test-abund-read-2.nobigcount.ct" ftype="ct" />
  	                <param name="no_zero" value="false" />
                     	<output name="output_histogram_filename">
                             	<assert_contents>
diff -r d067ee282412 -r 7611b274ed67 count-median.xml
--- a/count-median.xml	Sun Jun 29 17:52:24 2014 -0400
+++ b/count-median.xml	Sun Jun 29 18:11:02 2014 -0400
@@ -39,7 +39,7 @@
 	<tests>
 		<test>
                         <param name="input_sequence_filename" value="test-abund-read-2.fa" />
-                        <param name="input_counting_table_filename" value="test-abund-read-2.ct" />
+                        <param name="input_counting_table_filename" value="test-abund-read-2.ct" ftype="ct" />
                         <output name="output_summary_filename">
                                 <assert_contents>
                                         <has_line_matching expression="seq 1001 1001.0 0.0 18" />
diff -r d067ee282412 -r 7611b274ed67 filter-abund.xml
--- a/filter-abund.xml	Sun Jun 29 17:52:24 2014 -0400
+++ b/filter-abund.xml	Sun Jun 29 18:11:02 2014 -0400
@@ -52,7 +52,7 @@
         <tests>
                 <test interactor="api">
                         <param name="inputs" value="test-abund-read-2.fa" />
-                        <param name="input_counting_table_filename" value="test-abund-read-2.ct" />
+                        <param name="input_counting_table_filename" value="test-abund-read-2.ct" ftype="ct" />
                         <output name="output">
 				<discover_dataset name="test-abund-read-2.fa.abundfilt">
                                 	<assert_contents>
@@ -63,7 +63,7 @@
                 </test>
                 <test interactor="api">
                         <param name="input_sequence_filename" value="test-abund-read-2.fa" />
-                        <param name="input_counting_table_filename" value="test-abund-read-2.ct" />
+                        <param name="input_counting_table_filename" value="test-abund-read-2.ct" ftype="ct" />
 			<param name="cutoff" value="1" />
                         <output name="output">
 				<discover_dataset name="test-abund-read-2.fa.abundfilt">
diff -r d067ee282412 -r 7611b274ed67 normalize-by-median.xml
--- a/normalize-by-median.xml	Sun Jun 29 17:52:24 2014 -0400
+++ b/normalize-by-median.xml	Sun Jun 29 18:11:02 2014 -0400
@@ -134,7 +134,7 @@
 	
 	<tests>
 		<test interactor="api">
-			<param name="inputs" value="test-abund-read-2.fa" />
+			<param name="inputs" value="test-abund-read-2.fa"/>
 			<param name="cutoff" value="1" />
 			<param name="ksize" value="17" />
 			<output name="output">