# HG changeset patch
# User Michael R. Crusoe <mcrusoe@msu.edu>
# Date 1404077443 14400
# Node ID 00a6437ee54b25f9111b82e0ff9306dc300bb53a
# Parent  36e447a9ac52efb80ffa06517173b92e174405a2
normalize-by-median tests

diff -r 36e447a9ac52 -r 00a6437ee54b normalize-by-median.xml
--- a/normalize-by-median.xml	Sun Jun 29 17:13:59 2014 -0400
+++ b/normalize-by-median.xml	Sun Jun 29 17:30:43 2014 -0400
@@ -34,6 +34,7 @@
 		#if $countingtable_to_load
 			--loadtable=$countingtable_to_load
 		#end if
+		--report-total-kmers
 		#for input in $inputs
 			$input
 		#end for
@@ -130,21 +131,35 @@
 		<exit_code	range="1:"
 				level="fatal" />
 	</stdio>
-    
-    <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
-    <tests>
-        <!-- [HELP] Test files have to be in the ~/test-data directory
-        <test>
-            <param name="input" value="input_test.tab" />
-            <param name="int"   value="10" />
-            <output name="output" file="output_test.txt" />
-	</test> -->
-        <!-- [HELP] Multiple tests can be defined with different parameters -->
-<!--
-        <test>
-        </test>
--->
-    </tests>
+	
+	<tests interactor="api">
+		<test>
+			<param name="inputs" value="test-abund-read-2.fa" />
+			<param name="cutoff" value="1" />
+			<param name="ksize" value="17" />
+			<output name="output">
+				<discover_dataset name="test-abund-read-2.fa.keep">
+					<assert_contents>
+						<has_line_matching expression="GGTTGACGGGGCTCAGGGGG" />
+					</assert_contents>
+				</discover_dataset>
+			</output>
+		</test>
+		<test>
+			<param name="inputs" value="test-abund-read-2.fa" />
+			<param name="cutoff" value="2" />
+			<param name="ksize" value="17" />
+			<output name="output">
+				<discover_dataset name="test-abund-read-2.fa.keep">
+					<assert_contents>
+						<has_line_matching expression="GGTTGACGGGGCTCAGGGGG" />
+						<has_line_matching expression="GGTTGACGGGGCTCAGGG" />
+					</assert_contents>
+				</discover_dataset>
+			</output>
+		</test>
+
+	</tests>
     
     <!-- [OPTIONAL] Help displayed in Galaxy -->
     <!--