Mercurial > repos > cropgeeks > ukseed

changeset 21:5dab264e38c2 draft

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Uploaded
author cropgeeks
date Fri, 20 Apr 2018 05:35:52 -0400
parents 8f9667afe1dc
children 12db48e80a98
files ukseed.xml ukseed_stage1.xml ukseed_stage2.xml
diffstat 3 files changed, 10 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/ukseed.xml	Fri Apr 20 05:30:31 2018 -0400
+++ b/ukseed.xml	Fri Apr 20 05:35:52 2018 -0400
@@ -1,12 +1,12 @@
 <tool id="ukseed_dartseq" name="UK SeeD Dartseq Analysis" version="0.0.1">
     <description>run a dartseq analysis</description>
     <requirements>
-        <requirement type="package" version="1.90b4">plink</requirement>
-		<requirement type="package" version="1.12.2">bioconductor-snprelate</requirement>
-		<requirement type="package" version="2.10.0">bioconductor-qvalue</requirement>
+        <requirement type="package" version="1.12.2">bioconductor-snprelate</requirement>
+		<requirement type="package" version="1.90b4">plink</requirement>
 		<requirement type="package" version="0.8_14">r-amap</requirement>
-		<requirement type="package" version="1.2_16">r-rgdal</requirement>
 		<requirement type="package" version="1.0">r-dartr</requirement>
+		<requirement type="package" version="1.8_0">r-labdsv</requirement>
+		<!--<requirement type="package" version="2.10.0">bioconductor-qvalue</requirement>-->
     </requirements>
 
     <command><![CDATA[
@@ -18,7 +18,7 @@
     ]]></command>
 	
     <inputs>
-        <param format="csv" name="input" type="data" label="Input file"
+        <param format="csv,txt" name="input" type="data" label="Input file"
             help="Input file of genotype data"/>
     </inputs>
 
@@ -31,15 +31,15 @@
     </stdio>
 
 <help>
-In ``UK SeeD``, a BBSRC-Newton funded project, we have deployed an advanced computing hardware and software platform for the 
+In **UK-SeeD Data Analysis Infrastructure**, a BBSRC-Newton funded project, we have deployed an advanced computing hardware and software platform for the 
 analysis of large genomics datasets for wheat varieties. The platform integrates computing resources and bioinformatics expertise to 
 enable crop geneticists to implement sophisticated data analysis algorithms to improve the use of genetic resources for wheat and 
 other important crops. The computing platform is distributed across the partners’ sites with hardware deployed at CIMMYT (Mexico) and 
 the Earlham Institute (UK).  
 
-|JHI|
+|LOGOS|
 
-.. |JHI| image:: https://ics.hutton.ac.uk/resources/ukseed/jhi.png
+.. |LOGOS| image:: https://ics.hutton.ac.uk/resources/ukseed/logos.png
 </help>
 
     <citations>
--- a/ukseed_stage1.xml	Fri Apr 20 05:30:31 2018 -0400
+++ b/ukseed_stage1.xml	Fri Apr 20 05:35:52 2018 -0400
@@ -29,7 +29,7 @@
     </stdio>
 
 <help>
-In ``UK-SeeD Data Analysis Infrastructure``, a BBSRC-Newton funded project, we have deployed an advanced computing hardware and software platform for the 
+In **UK-SeeD Data Analysis Infrastructure**, a BBSRC-Newton funded project, we have deployed an advanced computing hardware and software platform for the 
 analysis of large genomics datasets for wheat varieties. The platform integrates computing resources and bioinformatics expertise to 
 enable crop geneticists to implement sophisticated data analysis algorithms to improve the use of genetic resources for wheat and 
 other important crops. The computing platform is distributed across the partners’ sites with hardware deployed at CIMMYT (Mexico) and 
--- a/ukseed_stage2.xml	Fri Apr 20 05:30:31 2018 -0400
+++ b/ukseed_stage2.xml	Fri Apr 20 05:35:52 2018 -0400
@@ -42,7 +42,7 @@
     </stdio>
 
 <help>
-In ``UK-SeeD Data Analysis Infrastructure``, a BBSRC-Newton funded project, we have deployed an advanced computing hardware and software platform for the 
+In **UK-SeeD Data Analysis Infrastructure**, a BBSRC-Newton funded project, we have deployed an advanced computing hardware and software platform for the 
 analysis of large genomics datasets for wheat varieties. The platform integrates computing resources and bioinformatics expertise to 
 enable crop geneticists to implement sophisticated data analysis algorithms to improve the use of genetic resources for wheat and 
 other important crops. The computing platform is distributed across the partners’ sites with hardware deployed at CIMMYT (Mexico) and