Mercurial > repos > cropgeeks > ukseed
diff dartseq_seeduk_1.R @ 3:dde8fec1b31e draft
Uploaded
| author | cropgeeks |
|---|---|
| date | Tue, 17 Apr 2018 08:28:05 -0400 |
| parents | a8f30e5859c9 |
| children | 2a49f0396e8b |
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--- a/dartseq_seeduk_1.R Tue Apr 17 08:21:30 2018 -0400 +++ b/dartseq_seeduk_1.R Tue Apr 17 08:28:05 2018 -0400 @@ -184,7 +184,7 @@ #Workaround to convert Dart format to 0-1-2 format library("SNPRelate") genofile <- snpgdsOpen("./gl2gds.gds") -snpgdsGDS2BED(genofile, bed.fn="test", snp.id=snpset) +#snpgdsGDS2BED(genofile, bed.fn="test", snp.id=snpset) #Error in .InitFile(gdsobj, https://protect-eu.mimecast.com/s/cfduCj27LTYnmOHWrcoC?domain=sample.id = https://protect-eu.mimecast.com/s/cfduCj27LTYnmOHWrcoC?domain=sample.id, https://protect-eu.mimecast.com/s/byfzCk59DIkOBwfVgChE?domain=snp.id = https://protect-eu.mimecast.com/s/byfzCk59DIkOBwfVgChE?domain=snp.id) : # object 'snpset' not found snpgdsGDS2BED(genofile, bed.fn="test")