view flapjack.py @ 34:c8d80417e902 draft

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from galaxy.datatypes.data import Text
from galaxy.datatypes.tabular import Tabular

class FlapjackFormat(Text):
    file_ext = "flapjack"

class FlapjackMapFormat(Tabular):
    file_ext = "fjmap"

    def sniff( self, filename ):
        h = open(filename)
        line = h.readline()
        if line.rstrip() != "# fjFile = MAP":
            h.close()
            return False
        return True

class FlapjackGenotypeFormat(Tabular):
    file_ext = "fjgenotype"

    def sniff( self, filename ):
        h = open(filename)
        line = h.readline()
        if line.rstrip() != "# fjFile = GENOTYPE":
            h.close()
            return False
        return True

class FlapjackPhenotypeFormat(Tabular):
    file_ext = "fjphenotye"

    def sniff( self, filename ):
        h = open(filename)
        line = h.readline()
        if line.rstrip() != "# fjFile = PHENOTYPE":
            h.close()
            return False
        return True

class FlapjackQtlFormat(Tabular):
    file_ext = "fjqtl"

    def sniff( self, filename ):
        h = open(filename)
        line = h.readline()
        if line.rstrip() != "# fjFile = QTL":
            h.close()
            return False
        return True

class FlapjackGraphFormat(Tabular):
    file_ext = "fjgraph"

    def sniff( self, filename ):
        h = open(filename)
        line = h.readline()
        if line.rstrip() != "# fjFile = GRAPH":
            h.close()
            return False
        return True