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1 <?xml version="1.0"?>
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2 <tool id="edu.tamu.cpt2.util.mga_to_gff3" name="MGA to GFF3" version="19.1.0.0">
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3 <description></description>
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4 <macros>
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5 <import>cpt-macros.xml</import>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="requirements"/>
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9 <command detect_errors="aggressive">
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10 @GENOME_SELECTOR_PRE@
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11
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12 python $__tool_directory__/cpt_convert_mga_to_gff3.py
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13 $mga
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14 @GENOME_SELECTOR@
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15 > $data
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16
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17 </command>
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18 <inputs>
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19 <param label="MGA Output" name="mga" type="data" format="tabular"/>
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20 <expand macro="genome_selector" />
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21 </inputs>
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22 <outputs>
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23 <data format="gff3" name="data">
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24 </data>
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25 </outputs>
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26 <tests>
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27 <test>
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28 <param name="reference_genome_source" value="history" />
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29 <param name="genome_fasta" value="ConvMga_In.fa" />
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30 <param name="mga" value="ConvMga_In.out" />
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31 <output name="data" file="ConvMga_Out.gff3" />
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32 </test>
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33 </tests>
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34 <help>
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35 **What it does**
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36
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37 Converts an input MetaGeneAnnotator table to the GFF3 format.
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38 </help>
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39 <expand macro="citations" />
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40 </tool>
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