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annotate test-data/Transterm_Out.gff3 @ 0:d5c3354c166d draft default tip

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author cpt_testbed
date Fri, 29 Apr 2022 10:33:36 +0000
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d5c3354c166d Uploaded
cpt_testbed
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1 ##gff-version 3
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cpt_testbed
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2 Miro feature terminator 781 803 . - . score=80;source=TranstermHP;ID=terminator_0;[1] 5' stem=GCGCCCGA;[2] loop=ACCA;[3] 3' stem=TTGGGCGC;[4] 3' tail=GTTATCAACCGCAAG;
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cpt_testbed
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3 Miro feature terminator 4005 4030 . - . score=100;source=TranstermHP;ID=terminator_1;[1] 5' stem=GCCTCTTGC;[2] loop=AAT;[3] 3' stem=GCAGGGGGC;[4] 3' tail=TTTTTGCTATATTGG;
d5c3354c166d Uploaded
cpt_testbed
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4 Miro feature terminator 5205 5239 . - . score=91;source=TranstermHP;ID=terminator_2;[1] 5' stem=TGGTAGACGGGT;[2] loop=TTAA;[3] 3' stem=ACCCGTTCACCG;[4] 3' tail=TTTCTTTATTCACTC;
d5c3354c166d Uploaded
cpt_testbed
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5 Miro feature terminator 5209 5238 . - . score=76;source=TranstermHP;ID=terminator_3;[1] 5' stem=GGTAGACGGGT;[2] loop=TTAA;[3] 3' stem=ACCCGTTCACC;[4] 3' tail=GTTTCTTTATTCACT;
d5c3354c166d Uploaded
cpt_testbed
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6 Miro feature terminator 6062 6114 . + . score=77;source=TranstermHP;ID=terminator_4;[1] 5' stem=GATCGGAGTAATGATTTCTGGA;[2] loop=GTA;[3] 3' stem=TCCATAA-TCATTTTTGCGATC;[4] 3' tail=TTTTTGTAATTCAAA;
d5c3354c166d Uploaded
cpt_testbed
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7 Miro feature terminator 7267 7293 . - . score=100;source=TranstermHP;ID=terminator_5;[1] 5' stem=GTAAACCCC;[2] loop=GAAA;[3] 3' stem=GGGGTTTTC;[4] 3' tail=TTTTTCATAGAACCC;
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cpt_testbed
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8 Miro feature terminator 7272 7298 . + . score=78;source=TranstermHP;ID=terminator_6;[1] 5' stem=GAAAACCCC;[2] loop=TTTC;[3] 3' stem=GGGGTTTAC;[4] 3' tail=TTGTTATAAGGGAAA;
d5c3354c166d Uploaded
cpt_testbed
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9 Miro feature terminator 7267 7288 . - . score=95;source=TranstermHP;ID=terminator_7;[1] 5' stem=CCCC;[2] loop=GAAA;[3] 3' stem=GGGG;[4] 3' tail=TTTTCTTTTTCATAG;
d5c3354c166d Uploaded
cpt_testbed
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10 Miro feature terminator 9374 9393 . - . score=85;source=TranstermHP;ID=terminator_8;[1] 5' stem=GGGC;[2] loop=TTCG;[3] 3' stem=GCCC;[4] 3' tail=TTTTTCTTAAAAGGA;
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cpt_testbed
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11 Miro feature terminator 10395 10420 . - . score=100;source=TranstermHP;ID=terminator_9;[1] 5' stem=GCCTCTTGC;[2] loop=ATT;[3] 3' stem=GCGGGAGGC;[4] 3' tail=TTTTTGGTATCTTGT;
d5c3354c166d Uploaded
cpt_testbed
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12 Miro feature terminator 11143 11171 . - . score=100;source=TranstermHP;ID=terminator_10;[1] 5' stem=GCCCTTGAC;[2] loop=TTCG;[3] 3' stem=GTTGAGGGC;[4] 3' tail=TTTTGTTATATTGGG;
d5c3354c166d Uploaded
cpt_testbed
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13 Miro feature terminator 15418 15435 . - . score=79;source=TranstermHP;ID=terminator_11;[1] 5' stem=CCGTT;[2] loop=AAA;[3] 3' stem=AACGG;[4] 3' tail=TTTATCTTCTTGAGG;
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cpt_testbed
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14 Miro feature terminator 18535 18550 . + . score=83;source=TranstermHP;ID=terminator_12;[1] 5' stem=GCCCC;[2] loop=GAAA;[3] 3' stem=GGGGC;[4] 3' tail=TTAATTTTTATGCGT;
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cpt_testbed
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15 Miro feature terminator 18527 18548 . - . score=100;source=TranstermHP;ID=terminator_13;[1] 5' stem=GCCCC;[2] loop=TTTC;[3] 3' stem=GGGGC;[4] 3' tail=TTTTTTGTATCTATA;
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cpt_testbed
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16 Miro feature terminator 20982 21009 . + . score=100;source=TranstermHP;ID=terminator_14;[1] 5' stem=TATGGGGC;[2] loop=CGAA;[3] 3' stem=GCCCCATA;[4] 3' tail=TTTTTTATAAAATTT;
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cpt_testbed
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17 Miro feature terminator 22215 22231 . - . score=83;source=TranstermHP;ID=terminator_15;[1] 5' stem=GGGGC;[2] loop=TTCG;[3] 3' stem=GCCCC;[4] 3' tail=TTTCATTAACTAGTG;
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cpt_testbed
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18 Miro feature terminator 22301 22335 . + . score=100;source=TranstermHP;ID=terminator_16;[1] 5' stem=CGTGATATTAGTC;[2] loop=AATG;[3] 3' stem=GACTAATAACATG;[4] 3' tail=TTTTTCAAACATACC;
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cpt_testbed
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19 Miro feature terminator 25631 25658 . - . score=100;source=TranstermHP;ID=terminator_17;[1] 5' stem=GCCCTTGCA;[2] loop=TTCG;[3] 3' stem=TGCAGGGGC;[4] 3' tail=TTTGTTATATTGGGT;
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cpt_testbed
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20 Miro feature terminator 25637 25663 . + . score=100;source=TranstermHP;ID=terminator_18;[1] 5' stem=GCCCCTGCA;[2] loop=CGAA;[3] 3' stem=TGCAAGGGC;[4] 3' tail=TTTTTGATTAGTGAC;
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cpt_testbed
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21 Miro feature terminator 26428 26448 . + . score=84;source=TranstermHP;ID=terminator_19;[1] 5' stem=CAACGGCG;[2] loop=TTT;[3] 3' stem=TGCCGTTG;[4] 3' tail=TTGATTTCGTCTATG;
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cpt_testbed
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22 Miro feature terminator 27622 27643 . - . score=91;source=TranstermHP;ID=terminator_20;[1] 5' stem=GGGGC;[2] loop=TACG;[3] 3' stem=GCCCC;[4] 3' tail=TTTCTTTTACACCAT;
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cpt_testbed
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23 Miro feature terminator 28647 28670 . + . score=95;source=TranstermHP;ID=terminator_21;[1] 5' stem=GTGGGGGC;[2] loop=CGAA;[3] 3' stem=GCCCCCGC;[4] 3' tail=TTGTATTACATGTCT;
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cpt_testbed
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24 Miro feature terminator 33136 33161 . - . score=78;source=TranstermHP;ID=terminator_22;[1] 5' stem=ATAGCCCC;[2] loop=TTTC;[3] 3' stem=GGGGCTAC;[4] 3' tail=TTGTTTGTTAGTGCT;
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cpt_testbed
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25 Miro feature terminator 33140 33160 . - . score=80;source=TranstermHP;ID=terminator_23;[1] 5' stem=TAGCCCC;[2] loop=TTTC;[3] 3' stem=GGGGCTA;[4] 3' tail=CTTGTTTGTTAGTGC;
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cpt_testbed
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26 Miro feature terminator 34515 34543 . + . score=95;source=TranstermHP;ID=terminator_24;[1] 5' stem=TGTCGGTCGGTA;[2] loop=ACG;[3] 3' stem=TACCGATCGTCA;[4] 3' tail=TTGATTTTGATTCAG;
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cpt_testbed
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27 Miro feature terminator 34518 34539 . + . score=86;source=TranstermHP;ID=terminator_25;[1] 5' stem=CGGTCGGTA;[2] loop=ACG;[3] 3' stem=TACCGATCG;[4] 3' tail=TCATTGATTTTGATT;
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cpt_testbed
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28 Miro feature terminator 36390 36420 . + . score=93;source=TranstermHP;ID=terminator_26;[1] 5' stem=GCCCATGT;[2] loop=AACGAA;[3] 3' stem=ACGTGGGC;[4] 3' tail=TTTGTTTTTATTTGA;
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cpt_testbed
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29 Miro feature terminator 38163 38193 . + . score=100;source=TranstermHP;ID=terminator_27;[1] 5' stem=GGGAACTGT;[2] loop=TAAC;[3] 3' stem=GCAGTTCCC;[4] 3' tail=TTTTTATTTGAGGAA;
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cpt_testbed
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30 Miro feature terminator 40429 40449 . - . score=78;source=TranstermHP;ID=terminator_28;[1] 5' stem=AGGGGC;[2] loop=CGAA;[3] 3' stem=GCCCCA;[4] 3' tail=TTTTTCATACTGCCA;
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cpt_testbed
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31 Miro feature terminator 40435 40454 . + . score=85;source=TranstermHP;ID=terminator_29;[1] 5' stem=GGGGC;[2] loop=TTCG;[3] 3' stem=GCCCC;[4] 3' tail=TTTCTTAACAAGGTA;
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cpt_testbed
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32 Miro feature terminator 40429 40448 . - . score=76;source=TranstermHP;ID=terminator_30;[1] 5' stem=GGGGC;[2] loop=CGAA;[3] 3' stem=GCCCC;[4] 3' tail=ATTTTTCATACTGCC;
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cpt_testbed
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33 Miro feature terminator 42727 42745 . + . score=91;source=TranstermHP;ID=terminator_31;[1] 5' stem=GCCCC;[2] loop=TTCG;[3] 3' stem=GGGGC;[4] 3' tail=TTTTTAAAGGTAAAG;
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cpt_testbed
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34 Miro feature terminator 44010 44060 . - . score=80;source=TranstermHP;ID=terminator_32;[1] 5' stem=CTGGAACCAGGGGA-TAAACG;[2] loop=CTAAAA;[3] 3' stem=TGTTTTCTCCCCTGGTTCCTG;[4] 3' tail=TGTTATAAGGGTTGC;
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cpt_testbed
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35 Miro feature terminator 44013 44058 . - . score=87;source=TranstermHP;ID=terminator_33;[1] 5' stem=GGAACCAGGGGA-TAAACG;[2] loop=CTAAAA;[3] 3' stem=TGTTTTCTCCCCTGGTTCC;[4] 3' tail=TGTGTTATAAGGGTT;
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cpt_testbed
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36 Miro feature terminator 45761 45801 . - . score=84;source=TranstermHP;ID=terminator_34;[1] 5' stem=CGAAAGAAAGCAGGGA;[2] loop=ATCAA;[3] 3' stem=TCCCTGCTTTTTCTTG;[4] 3' tail=TTCTATCGTTCGGCT;
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cpt_testbed
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37 Miro feature terminator 45774 45799 . + . score=100;source=TranstermHP;ID=terminator_35;[1] 5' stem=GCAGGGA;[2] loop=TTGAT;[3] 3' stem=TCCCTGC;[4] 3' tail=TTTCTTTCGTTGATG;
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cpt_testbed
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38 Miro feature terminator 45766 45792 . - . score=100;source=TranstermHP;ID=terminator_36;[1] 5' stem=GCAGGGA;[2] loop=ATCAA;[3] 3' stem=TCCCTGC;[4] 3' tail=TTTTTCTTGTTCTAT;
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cpt_testbed
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39 Miro feature terminator 48970 49007 . - . score=100;source=TranstermHP;ID=terminator_37;[1] 5' stem=GCGATCTGACCATT;[2] loop=GTG;[3] 3' stem=AATGTTCAGGGCGC;[4] 3' tail=TTTTCTTCACTCAGT;
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cpt_testbed
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40 Miro feature terminator 50925 50946 . - . score=76;source=TranstermHP;ID=terminator_38;[1] 5' stem=GGCTATC;[2] loop=CGAA;[3] 3' stem=GATAGCC;[4] 3' tail=ATTTGATTATTTGTT;
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cpt_testbed
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41 Miro feature terminator 50929 50954 . + . score=91;source=TranstermHP;ID=terminator_39;[1] 5' stem=GGCTATC;[2] loop=TTCG;[3] 3' stem=GATAGCC;[4] 3' tail=TTATTTTTGGGGTGT;
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cpt_testbed
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42 Miro feature terminator 52180 52213 . + . score=100;source=TranstermHP;ID=terminator_40;[1] 5' stem=GCCGTTGCC;[2] loop=GAAA;[3] 3' stem=GGTAGCGGC;[4] 3' tail=TTTTTCTTTTTTGGT;
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cpt_testbed
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43 Miro feature terminator 53407 53432 . - . score=90;source=TranstermHP;ID=terminator_41;[1] 5' stem=TGGT;[2] loop=TAGTCC;[3] 3' stem=ACCA;[4] 3' tail=TTTTTTCTTTTTGCC;
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cpt_testbed
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44 Miro feature terminator 56264 56293 . - . score=81;source=TranstermHP;ID=terminator_42;[1] 5' stem=GCCCCCGAC;[2] loop=CGGA;[3] 3' stem=GTCAAGGGC;[4] 3' tail=TTTTTATTAAAATAG;
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cpt_testbed
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45 Miro feature terminator 56272 56299 . + . score=91;source=TranstermHP;ID=terminator_43;[1] 5' stem=GCCCTTGAC;[2] loop=TCCG;[3] 3' stem=GTCGGGGGC;[4] 3' tail=TTTGTTATATTGGGC;
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cpt_testbed
parents:
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46 Miro feature terminator 56925 56962 . + . score=86;source=TranstermHP;ID=terminator_44;[1] 5' stem=TAAAGAAGCCTCTTGC;[2] loop=AAT;[3] 3' stem=GCAGGGGGCTTTTTTG;[4] 3' tail=TATAGTGTGTTCATT;
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cpt_testbed
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47 Miro feature terminator 56932 56960 . + . score=100;source=TranstermHP;ID=terminator_45;[1] 5' stem=GCCTCTTGC;[2] loop=AAT;[3] 3' stem=GCAGGGGGC;[4] 3' tail=TTTTTTGTATAGTGT;
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cpt_testbed
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48 Miro feature terminator 60382 60407 . - . score=100;source=TranstermHP;ID=terminator_46;[1] 5' stem=GTTTCT;[2] loop=GTTC;[3] 3' stem=AGAAAC;[4] 3' tail=TTTTTCTTTTGTTCT;
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cpt_testbed
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49 Miro feature terminator 62185 62218 . - . score=100;source=TranstermHP;ID=terminator_47;[1] 5' stem=TTGCGGCACCCCC;[2] loop=AGA;[3] 3' stem=GGGGATACCGCGA;[4] 3' tail=TTTTTAATATTTTTG;
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cpt_testbed
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50 Miro feature terminator 62192 62216 . - . score=80;source=TranstermHP;ID=terminator_48;[1] 5' stem=GCGGCACCCCC;[2] loop=AGA;[3] 3' stem=GGGGATACCGC;[4] 3' tail=GATTTTTAATATTTT;
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cpt_testbed
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51 Miro feature terminator 64085 64102 . + . score=85;source=TranstermHP;ID=terminator_49;[1] 5' stem=GGGGC;[2] loop=TACG;[3] 3' stem=GCCCC;[4] 3' tail=TTTTGAGGATCTTAT;
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cpt_testbed
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52 Miro feature terminator 64079 64098 . - . score=91;source=TranstermHP;ID=terminator_50;[1] 5' stem=GGGGC;[2] loop=CGTA;[3] 3' stem=GCCCC;[4] 3' tail=TTTATTGTCCTGTAA;
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cpt_testbed
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53 Miro feature terminator 65806 65835 . + . score=81;source=TranstermHP;ID=terminator_51;[1] 5' stem=GCCCCTTCC;[2] loop=TTTC;[3] 3' stem=GGTTGGGGC;[4] 3' tail=TTTCTTTTAGAATTC;
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cpt_testbed
parents:
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54 Miro feature terminator 65798 65827 . - . score=90;source=TranstermHP;ID=terminator_52;[1] 5' stem=GCCCCAACC;[2] loop=GAAA;[3] 3' stem=GGAAGGGGC;[4] 3' tail=TTTTTGTTATGATGC;
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cpt_testbed
parents:
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55 Miro feature terminator 68462 68480 . - . score=87;source=TranstermHP;ID=terminator_53;[1] 5' stem=GCCCCC;[2] loop=GAAA;[3] 3' stem=GGGGGC;[4] 3' tail=TTTGAGGTGACTTGT;
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cpt_testbed
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56 Miro feature terminator 72046 72061 . + . score=76;source=TranstermHP;ID=terminator_54;[1] 5' stem=GCCCC;[2] loop=TTTC;[3] 3' stem=GGGGC;[4] 3' tail=TTGATTAATCAATGT;
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cpt_testbed
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57 Miro feature terminator 72041 72059 . - . score=100;source=TranstermHP;ID=terminator_55;[1] 5' stem=GCCCC;[2] loop=GAAA;[3] 3' stem=GGGGC;[4] 3' tail=TTTTTCGTGAGGTTT;
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cpt_testbed
parents:
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58 Miro feature terminator 73234 73260 . - . score=100;source=TranstermHP;ID=terminator_56;[1] 5' stem=GGCATTCGGC;[2] loop=GGG;[3] 3' stem=GTCGAATGCC;[4] 3' tail=TTTTAACGTCTGAAA;
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cpt_testbed
parents:
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59 Miro feature terminator 73238 73264 . + . score=89;source=TranstermHP;ID=terminator_57;[1] 5' stem=GGCATTCGAC;[2] loop=CCC;[3] 3' stem=GCCGAATGCC;[4] 3' tail=TTATCGAAACCGAGC;
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cpt_testbed
parents:
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60 Miro feature terminator 75458 75487 . + . score=78;source=TranstermHP;ID=terminator_58;[1] 5' stem=TCTGATTGAG;[2] loop=TGA;[3] 3' stem=TTCAATCAGC;[4] 3' tail=TTTTTATCGCGTCTG;
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cpt_testbed
parents:
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61 Miro feature terminator 76245 76268 . - . score=100;source=TranstermHP;ID=terminator_59;[1] 5' stem=CCGCCCGG;[2] loop=TTAGT;[3] 3' stem=CCGGGTGG;[4] 3' tail=TTTGCCTGTTACCTG;
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cpt_testbed
parents:
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62 Miro feature terminator 76527 76562 . - . score=77;source=TranstermHP;ID=terminator_60;[1] 5' stem=AAAAAGCCCTTGCG;[2] loop=TTCT;[3] 3' stem=CGTGAGGGCTTTTG;[4] 3' tail=TATTATACACACATA;
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cpt_testbed
parents:
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63 Miro feature terminator 76530 76557 . - . score=100;source=TranstermHP;ID=terminator_61;[1] 5' stem=GCCCTTGCG;[2] loop=TTCT;[3] 3' stem=CGTGAGGGC;[4] 3' tail=TTTTGTATTATACAC;
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cpt_testbed
parents:
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64 Miro feature terminator 76536 76565 . + . score=81;source=TranstermHP;ID=terminator_62;[1] 5' stem=GCCCTCACG;[2] loop=AGAA;[3] 3' stem=CGCAAGGGC;[4] 3' tail=TTTTTATTAAATTTC;
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cpt_testbed
parents:
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65 Miro feature terminator 76591 76625 . - . score=78;source=TranstermHP;ID=terminator_63;[1] 5' stem=CCGCACATA-TAGA;[2] loop=TGA;[3] 3' stem=TCTTTTATGTGCGG;[4] 3' tail=TTATTGTGAATCCAG;
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cpt_testbed
parents:
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66 Miro feature terminator 77874 77893 . + . score=84;source=TranstermHP;ID=terminator_64;[1] 5' stem=GCCCCC;[2] loop=AAAGA;[3] 3' stem=GGGGGC;[4] 3' tail=TTTAAAACATTATTT;
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cpt_testbed
parents:
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67 Miro feature terminator 79621 79641 . - . score=100;source=TranstermHP;ID=terminator_65;[1] 5' stem=CGAGGC;[2] loop=TTCG;[3] 3' stem=GCCTCG;[4] 3' tail=TTTTTGCTATAAATA;
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cpt_testbed
parents:
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68 Miro feature terminator 79626 79645 . + . score=82;source=TranstermHP;ID=terminator_66;[1] 5' stem=CGAGGC;[2] loop=CGAA;[3] 3' stem=GCCTCG;[4] 3' tail=TTATAATATTTTTGC;
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cpt_testbed
parents:
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69 Miro feature terminator 80210 80230 . + . score=76;source=TranstermHP;ID=terminator_67;[1] 5' stem=GCAAC;[2] loop=GGTA;[3] 3' stem=GTTGC;[4] 3' tail=TTTCTTTCCACAATA;
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cpt_testbed
parents:
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70 Miro feature terminator 83658 83686 . + . score=100;source=TranstermHP;ID=terminator_68;[1] 5' stem=GCCCCTGAC;[2] loop=CGAA;[3] 3' stem=GTCAAGGGC;[4] 3' tail=TTTTTGTCAAATGAT;
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cpt_testbed
parents:
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71 Miro feature terminator 83649 83679 . - . score=100;source=TranstermHP;ID=terminator_69;[1] 5' stem=GCCCTTGAC;[2] loop=TTCG;[3] 3' stem=GTCAGGGGC;[4] 3' tail=TTTTTTATTATGGAT;
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cpt_testbed
parents:
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72 Miro feature terminator 83687 83705 . + . score=78;source=TranstermHP;ID=terminator_70;[1] 5' stem=CAAA;[2] loop=TGA;[3] 3' stem=TTTG;[4] 3' tail=TTTTTCTTCTAACAG;
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cpt_testbed
parents:
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73 Miro feature terminator 85165 85188 . - . score=100;source=TranstermHP;ID=terminator_71;[1] 5' stem=GGGGGC;[2] loop=GAAA;[3] 3' stem=GCCCCC;[4] 3' tail=TTTTTTGTGAGGTGT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
74 Miro feature terminator 87545 87564 . + . score=86;source=TranstermHP;ID=terminator_72;[1] 5' stem=GGGGC;[2] loop=CAAA;[3] 3' stem=GCCCC;[4] 3' tail=TTTGTTACGCTAATT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
75 Miro feature terminator 87973 88001 . - . score=88;source=TranstermHP;ID=terminator_73;[1] 5' stem=TACCCTGTGT;[2] loop=ACCC;[3] 3' stem=AAACAGGGTA;[4] 3' tail=TTTTTACAAGAGGTG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
76 Miro feature terminator 87978 88006 . + . score=79;source=TranstermHP;ID=terminator_74;[1] 5' stem=TACCCTGTTT;[2] loop=GGGT;[3] 3' stem=ACACAGGGTA;[4] 3' tail=TTTATGGTTTAAGAG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
77 Miro feature terminator 88816 88837 . - . score=100;source=TranstermHP;ID=terminator_75;[1] 5' stem=GCCCC;[2] loop=GAAA;[3] 3' stem=GGGGC;[4] 3' tail=TTTTTTGTAGGTAAA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
78 Miro feature terminator 92679 92701 . - . score=78;source=TranstermHP;ID=terminator_76;[1] 5' stem=GCGTAT;[2] loop=AGT;[3] 3' stem=ATCCGC;[4] 3' tail=TTTTTCTTCTCCGTG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
79 Miro feature terminator 93200 93258 . + . score=100;source=TranstermHP;ID=terminator_77;[1] 5' stem=TCGTTT-CTATGTGTGTAAGGTA;[2] loop=TCAT;[3] 3' stem=TACCCTACACACAACGCAAGCGA;[4] 3' tail=TTTTTATTTTCCGTA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
80 Miro feature terminator 94234 94268 . - . score=100;source=TranstermHP;ID=terminator_78;[1] 5' stem=CAAAACCCCTTGCC;[2] loop=TAT;[3] 3' stem=GGTGAGGGGTTTTG;[4] 3' tail=TTATATTACACACAT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
81 Miro feature terminator 94236 94263 . - . score=100;source=TranstermHP;ID=terminator_79;[1] 5' stem=CCCCTTGCC;[2] loop=TAT;[3] 3' stem=GGTGAGGGG;[4] 3' tail=TTTTGTTATATTACA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
82 Miro feature terminator 95931 95958 . - . score=100;source=TranstermHP;ID=terminator_80;[1] 5' stem=GCCCTTGCA;[2] loop=TTAG;[3] 3' stem=TGCAGGGGC;[4] 3' tail=TTTGTTATATTACAC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
83 Miro feature terminator 95937 95963 . + . score=100;source=TranstermHP;ID=terminator_81;[1] 5' stem=GCCCCTGCA;[2] loop=CTAA;[3] 3' stem=TGCAAGGGC;[4] 3' tail=TTTTTGATTATTTTG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
84 Miro feature terminator 97741 97762 . + . score=79;source=TranstermHP;ID=terminator_82;[1] 5' stem=AAGGGGC;[2] loop=CGAA;[3] 3' stem=GCCCCTA;[4] 3' tail=TTTTGCGTTCTTCTG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
85 Miro feature terminator 97740 97756 . - . score=78;source=TranstermHP;ID=terminator_83;[1] 5' stem=GGGGC;[2] loop=TTCG;[3] 3' stem=GCCCC;[4] 3' tail=TTTGAGGATCATATT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
86 Miro feature terminator 97743 97762 . + . score=81;source=TranstermHP;ID=terminator_84;[1] 5' stem=GGGGC;[2] loop=CGAA;[3] 3' stem=GCCCC;[4] 3' tail=TATTTTGCGTTCTTC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
87 Miro feature terminator 100342 100369 . - . score=100;source=TranstermHP;ID=terminator_85;[1] 5' stem=GCCCTTGCA;[2] loop=TTCG;[3] 3' stem=TGCAGGGGC;[4] 3' tail=TTTGTTATATTGGCC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
88 Miro feature terminator 100348 100375 . + . score=100;source=TranstermHP;ID=terminator_86;[1] 5' stem=GCCCCTGCA;[2] loop=CGAA;[3] 3' stem=TGCAAGGGC;[4] 3' tail=TTTTTTCAGTTTTTC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
89 Miro feature terminator 101556 101578 . - . score=100;source=TranstermHP;ID=terminator_87;[1] 5' stem=GGGGC;[2] loop=TTCG;[3] 3' stem=GCCCC;[4] 3' tail=TTTTTTATTGGGGTG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
90 Miro feature terminator 101565 101583 . + . score=85;source=TranstermHP;ID=terminator_88;[1] 5' stem=GGGGC;[2] loop=CGAA;[3] 3' stem=GCCCC;[4] 3' tail=TTTGTAATAAATTTG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
91 Miro feature terminator 101890 101905 . + . score=76;source=TranstermHP;ID=terminator_89;[1] 5' stem=GAGCA;[2] loop=CTT;[3] 3' stem=TGCTC;[4] 3' tail=TTTAGTTGTTTCAAA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
92 Miro feature terminator 104254 104284 . - . score=83;source=TranstermHP;ID=terminator_90;[1] 5' stem=GCCCCAACC;[2] loop=GAAA;[3] 3' stem=GGAAGGGGC;[4] 3' tail=TTTATTTTTACAGGG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
93 Miro feature terminator 104813 104840 . - . score=85;source=TranstermHP;ID=terminator_91;[1] 5' stem=AAAAAGCCCC;[2] loop=TTTC;[3] 3' stem=GGGGCTTTTA;[4] 3' tail=TTTTGCAAATTCTCC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
94 Miro feature terminator 104822 104840 . + . score=100;source=TranstermHP;ID=terminator_92;[1] 5' stem=GCCCC;[2] loop=GAAA;[3] 3' stem=GGGGC;[4] 3' tail=TTTTTAGTATCTGTT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
95 Miro feature terminator 104813 104835 . - . score=100;source=TranstermHP;ID=terminator_93;[1] 5' stem=GCCCC;[2] loop=TTTC;[3] 3' stem=GGGGC;[4] 3' tail=TTTTATTTTGCAAAT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
96 Miro feature terminator 106893 106918 . - . score=90;source=TranstermHP;ID=terminator_94;[1] 5' stem=ACCGAT;[2] loop=CGC;[3] 3' stem=ATCGGA;[4] 3' tail=TTTTTGTTTTTGGGC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
97 Miro feature terminator 110693 110717 . - . score=80;source=TranstermHP;ID=terminator_95;[1] 5' stem=CCCCCGATA;[2] loop=AAGA;[3] 3' stem=TATCGGGGA;[4] 3' tail=TTTGGTTAATCTGTT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
98 Miro feature terminator 110696 110718 . + . score=79;source=TranstermHP;ID=terminator_96;[1] 5' stem=TCCCCGATA;[2] loop=TCTT;[3] 3' stem=TATCGGGGG;[4] 3' tail=TACTTTCGAAGAAAT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
99 Miro feature terminator 110693 110716 . - . score=86;source=TranstermHP;ID=terminator_97;[1] 5' stem=CCCCGATA;[2] loop=AAGA;[3] 3' stem=TATCGGGG;[4] 3' tail=ATTTGGTTAATCTGT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
100 Miro feature terminator 112583 112613 . + . score=100;source=TranstermHP;ID=terminator_98;[1] 5' stem=CCCCTGTC;[2] loop=TTCG;[3] 3' stem=GATAGGGG;[4] 3' tail=TTTTTCTTTTTATAA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
101 Miro feature terminator 115564 115582 . - . score=77;source=TranstermHP;ID=terminator_99;[1] 5' stem=CCGT;[2] loop=TAA;[3] 3' stem=GCGG;[4] 3' tail=TTTTTCTTCAACGTC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
102 Miro feature terminator 115812 115841 . - . score=76;source=TranstermHP;ID=terminator_100;[1] 5' stem=TA-GATCGGCG;[2] loop=GCAT;[3] 3' stem=CGCCGATCATA;[4] 3' tail=TCTTTGAAGTTCATC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
103 Miro feature terminator 115816 115840 . - . score=76;source=TranstermHP;ID=terminator_101;[1] 5' stem=AGATCGGCG;[2] loop=GCAT;[3] 3' stem=CGCCGATCA;[4] 3' tail=TATCTTTGAAGTTCA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
104 Miro feature terminator 115818 115839 . - . score=91;source=TranstermHP;ID=terminator_102;[1] 5' stem=GATCGGCG;[2] loop=GCAT;[3] 3' stem=CGCCGATC;[4] 3' tail=ATATCTTTGAAGTTC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
105 Miro feature terminator 123258 123275 . + . score=85;source=TranstermHP;ID=terminator_103;[1] 5' stem=GGGGC;[2] loop=TTCG;[3] 3' stem=GCCCC;[4] 3' tail=TTTTGAGGATCTTTA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
106 Miro feature terminator 123253 123271 . - . score=81;source=TranstermHP;ID=terminator_104;[1] 5' stem=GGGGC;[2] loop=CGAA;[3] 3' stem=GCCCC;[4] 3' tail=TTGTTAATCGTTAAG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
107 Miro feature terminator 125182 125208 . - . score=87;source=TranstermHP;ID=terminator_105;[1] 5' stem=TTCATGG;[2] loop=ATG;[3] 3' stem=CCAGGAA;[4] 3' tail=TTTTTCTTTTGATGC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
108 Miro feature terminator 130203 130220 . - . score=79;source=TranstermHP;ID=terminator_106;[1] 5' stem=GGGGCT;[2] loop=TTTC;[3] 3' stem=AGCCCC;[4] 3' tail=TTACATGTTATACTG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
109 Miro feature terminator 130562 130601 . - . score=95;source=TranstermHP;ID=terminator_107;[1] 5' stem=TCGTTACGGTT;[2] loop=TTTCTGTTT;[3] 3' stem=AACCGTAGCGG;[4] 3' tail=TTTTTTTGTAGTTTG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
110 Miro feature terminator 130746 130765 . + . score=78;source=TranstermHP;ID=terminator_108;[1] 5' stem=GGGGTA;[2] loop=GCAA;[3] 3' stem=TACCCC;[4] 3' tail=TTATCATTATTTTTC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
111 Miro feature terminator 136109 136135 . + . score=100;source=TranstermHP;ID=terminator_109;[1] 5' stem=GGGAACC;[2] loop=TTCG;[3] 3' stem=GGTTCCC;[4] 3' tail=TTTTTGTTTATATAA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
112 Miro feature terminator 136106 136126 . - . score=84;source=TranstermHP;ID=terminator_110;[1] 5' stem=GGGAACC;[2] loop=CGAA;[3] 3' stem=GGTTCCC;[4] 3' tail=TTTAAAAAGTCGTTG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
113 Miro feature terminator 138160 138189 . + . score=100;source=TranstermHP;ID=terminator_111;[1] 5' stem=GGTGGAGTAGG;[2] loop=GAAA;[3] 3' stem=CTTACTCCACC;[4] 3' tail=TTTTAATAATTGTTA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
114 Miro feature terminator 138156 138185 . - . score=87;source=TranstermHP;ID=terminator_112;[1] 5' stem=GGTGGAGTAAG;[2] loop=TTTC;[3] 3' stem=CCTACTCCACC;[4] 3' tail=TATTGAATATTATCC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
115 Miro feature terminator 139269 139296 . - . score=79;source=TranstermHP;ID=terminator_113;[1] 5' stem=GCCCCAACC;[2] loop=GAAA;[3] 3' stem=GGAAGGGGC;[4] 3' tail=TTTTGTACATTTGCT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
116 Miro feature terminator 139275 139304 . + . score=79;source=TranstermHP;ID=terminator_114;[1] 5' stem=GCCCCTTCC;[2] loop=TTTC;[3] 3' stem=GGTTGGGGC;[4] 3' tail=TTCTTTTTAGAACTT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
117 Miro feature terminator 142145 142163 . - . score=81;source=TranstermHP;ID=terminator_115;[1] 5' stem=GGGGC;[2] loop=CGTA;[3] 3' stem=GCCCC;[4] 3' tail=TTGTTAATCAATAAA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
118 Miro feature terminator 142150 142172 . + . score=100;source=TranstermHP;ID=terminator_116;[1] 5' stem=GGGGC;[2] loop=TACG;[3] 3' stem=GCCCC;[4] 3' tail=TTTTCTTTTAGGTGA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
119 Miro feature terminator 142652 142673 . + . score=76;source=TranstermHP;ID=terminator_117;[1] 5' stem=CGGGGT;[2] loop=TACT;[3] 3' stem=ACTCCG;[4] 3' tail=TTTTGTCCTGAATGC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
120 Miro feature terminator 144130 144157 . - . score=100;source=TranstermHP;ID=terminator_118;[1] 5' stem=GGGAACC;[2] loop=ATTGC;[3] 3' stem=GGTTCCC;[4] 3' tail=TTTTTTGTTATTGAT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
121 Miro feature terminator 144139 144164 . + . score=100;source=TranstermHP;ID=terminator_119;[1] 5' stem=GGGAACCG;[2] loop=CAA;[3] 3' stem=TGGTTCCC;[4] 3' tail=TTTTTTTACAATCTT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
122 Miro feature terminator 148986 149009 . - . score=84;source=TranstermHP;ID=terminator_120;[1] 5' stem=CAAACTC;[2] loop=ATC;[3] 3' stem=GAGTTGG;[4] 3' tail=TTTTTGTCTTTTTCT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
123 Miro feature terminator 151660 151682 . - . score=79;source=TranstermHP;ID=terminator_121;[1] 5' stem=CCTTCG;[2] loop=AGAT;[3] 3' stem=CGGAGG;[4] 3' tail=TTTTCTTGAGATATT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
124 Miro feature terminator 153496 153528 . + . score=79;source=TranstermHP;ID=terminator_122;[1] 5' stem=CTTGACTCCCTGC;[2] loop=ATGA;[3] 3' stem=GCGGGGTATCAAG;[4] 3' tail=TTTGGTTTATCAAAC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
125 Miro feature terminator 156980 157015 . + . score=78;source=TranstermHP;ID=terminator_123;[1] 5' stem=AAAAAGCCCTTGAC;[2] loop=TTCG;[3] 3' stem=GTTGAGGGCTTTTG;[4] 3' tail=TTATATTAGGCCTAT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
126 Miro feature terminator 156985 157013 . + . score=100;source=TranstermHP;ID=terminator_124;[1] 5' stem=GCCCTTGAC;[2] loop=TTCG;[3] 3' stem=GTTGAGGGC;[4] 3' tail=TTTTGTTATATTAGG;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
127 Miro feature terminator 160711 160734 . + . score=100;source=TranstermHP;ID=terminator_125;[1] 5' stem=GGGTGC;[2] loop=TCCG;[3] 3' stem=GCACCC;[4] 3' tail=TTTTTTATGAGGTGA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
128 Miro feature terminator 161967 161988 . + . score=100;source=TranstermHP;ID=terminator_126;[1] 5' stem=TGGCC;[2] loop=TTCG;[3] 3' stem=GGCCA;[4] 3' tail=TTTTTTGTATATAAA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
129 Miro feature terminator 165945 165966 . - . score=100;source=TranstermHP;ID=terminator_127;[1] 5' stem=GGCGGTG;[2] loop=TCCC;[3] 3' stem=TACCGCC;[4] 3' tail=TTTTGATTTAGTGTA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
130 Miro feature terminator 166926 166950 . - . score=91;source=TranstermHP;ID=terminator_128;[1] 5' stem=GGCCCG;[2] loop=ATGATC;[3] 3' stem=CGGGCC;[4] 3' tail=TTTGTTTATGCATCA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
131 Miro feature terminator 166933 166954 . + . score=80;source=TranstermHP;ID=terminator_129;[1] 5' stem=GGCCCGG;[2] loop=ATCA;[3] 3' stem=TCGGGCC;[4] 3' tail=TTATAAATATGTAAA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
132 Miro feature terminator 171472 171489 . + . score=85;source=TranstermHP;ID=terminator_130;[1] 5' stem=GGGGC;[2] loop=TTCG;[3] 3' stem=GCCCC;[4] 3' tail=TTTTAGGAGAAATAA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
133 Miro feature terminator 171470 171485 . - . score=76;source=TranstermHP;ID=terminator_131;[1] 5' stem=GGGGC;[2] loop=CGAA;[3] 3' stem=GCCCC;[4] 3' tail=TTACATTATTTCAGT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
134 Miro feature terminator 172069 172099 . - . score=76;source=TranstermHP;ID=terminator_132;[1] 5' stem=AAAAAGGCTACC;[2] loop=TATAT;[3] 3' stem=GGTAGCCTTTTA;[4] 3' tail=ATATATTTAATAGTA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
135 Miro feature terminator 172072 172094 . - . score=95;source=TranstermHP;ID=terminator_133;[1] 5' stem=GGCTACC;[2] loop=TATAT;[3] 3' stem=GGTAGCC;[4] 3' tail=TTTTAATATATTTAA;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
136 Miro feature terminator 172076 172102 . + . score=100;source=TranstermHP;ID=terminator_134;[1] 5' stem=GGCTACC;[2] loop=ATATA;[3] 3' stem=GGTAGCC;[4] 3' tail=TTTTTGTTGCATCCT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
137 Miro feature terminator 172378 172429 . + . score=100;source=TranstermHP;ID=terminator_135;[1] 5' stem=TCCGCGTTGGAA--CAGTTGAGC;[2] loop=ATA;[3] 3' stem=GTTCATCTTACTTCCAACGCGGA;[4] 3' tail=TTTTTCGGCGGTACT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
138 Miro feature terminator 174191 174227 . - . score=100;source=TranstermHP;ID=terminator_136;[1] 5' stem=GAAAAAGCCCTTGAC;[2] loop=TTCG;[3] 3' stem=GTCAGGGGCTTTTGC;[4] 3' tail=TATATTAGCCATATC;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
139 Miro feature terminator 174200 174226 . + . score=100;source=TranstermHP;ID=terminator_137;[1] 5' stem=GCCCCTGAC;[2] loop=CGAA;[3] 3' stem=GTCAAGGGC;[4] 3' tail=TTTTTCATCATTCAT;
d5c3354c166d Uploaded
cpt_testbed
parents:
diff changeset
140 Miro feature terminator 174196 174221 . - . score=100;source=TranstermHP;ID=terminator_138;[1] 5' stem=GCCCTTGAC;[2] loop=TTCG;[3] 3' stem=GTCAGGGGC;[4] 3' tail=TTTTGCTATATTAGC;