Mercurial > repos > cpt_testbed > functionalworkflow
annotate fasta_len.py @ 0:f678e282b320 draft default tip
"planemo upload"
| author | cpt_testbed |
|---|---|
| date | Fri, 06 May 2022 07:07:23 +0000 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 #!/usr/bin/env python |
| 2 import argparse | |
| 3 from Bio import SeqIO | |
| 4 import sys | |
| 5 | |
| 6 | |
| 7 if __name__ == "__main__": | |
| 8 parser = argparse.ArgumentParser() | |
| 9 parser.add_argument("fasta", type=argparse.FileType("r")) | |
| 10 args = parser.parse_args() | |
| 11 | |
| 12 for record in SeqIO.parse(args.fasta, "fasta"): | |
| 13 sys.stdout.write("%s\t%s\n" % (record.id, len(record))) |