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view clustalomega/clustal-omega-0.2.0/src/clustal/ktuple_pair.h @ 0:ea6d0e588642 default tip
Migrated tool version 0.2 from old tool shed archive to new tool shed repository
author | clustalomega |
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date | Tue, 07 Jun 2011 16:13:02 -0400 |
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/********************************************************************* * Clustal Omega - Multiple sequence alignment * * Copyright (C) 2010 University College Dublin * * Clustal-Omega is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation; either version 2 of the * License, or (at your option) any later version. * * This file is part of Clustal-Omega. * ********************************************************************/ /* * RCS $Id: ktuple_pair.h 193 2011-02-07 15:45:21Z andreas $ */ /* K-Tuple code for pairwise alignment (Wilbur and Lipman (1983) * Most code taken from showpair (Clustal 1.83) */ #ifndef CLUSTALO_KTUPLE_PAIR_H #define CLUSTALO_KTUPLE_PAIR_H #include "seq.h" #include "symmatrix.h" #include "progress.h" typedef struct { int ktup; int window; int wind_gap; int signif; } ktuple_param_t; extern void KTuplePairDist(symmatrix_t *tmat, mseq_t *mseq, int istart, int iend, int jstart, int jend, ktuple_param_t *aln_param, progress_t *prProgress, unsigned long int *ulStepNo, unsigned long int ulTotalStepNo); #endif