# HG changeset patch
# User cjav
# Date 1378491303 14400
# Node ID f4064070084653c7826bb047efd0a8adc8a29469
# Parent  5cb5f350b053509940e2a478e7ebf4c89fc4d250
Uploaded

diff -r 5cb5f350b053 -r f40640700846 ngs-tools_split_by_barcode.xml
--- a/ngs-tools_split_by_barcode.xml	Fri Sep 06 13:38:25 2013 -0400
+++ b/ngs-tools_split_by_barcode.xml	Fri Sep 06 14:15:03 2013 -0400
@@ -5,7 +5,7 @@
     </requirements>
     <command>
         ngs-tools split-by-barcode
-            $keep_barcode $input_format.format
+            $trim_barcode $input_format.format
             --barcode-size $barcode_length --max-distance $max_distance
             #for $i in $barcodes
               --barcode ${i.barcode}
@@ -39,9 +39,9 @@
         <repeat name="barcodes" title="Barcode" help="Barcodes to use. By default all barcodes with the correct length in the index are used. By using this option you can limit which ones to use.">
             <param name="barcode" type="text" label="Barcode to use" />
         </repeat>
-        <param name="keep_barcode" type="select" label="Do not trim the barcode" help="By default barcodes are trimmed from the resulting splitted datasets">
-            <option value="" selected="true">No</option>
-            <option value="--keep-barcode">Yes</option>
+        <param name="trim_barcode" type="select" label="Trim the barcode" help="By default barcodes are trimmed from the resulting splitted datasets">
+            <option value="" selected="true">Yes</option>
+            <option value="--keep-barcode">No</option>
         </param>
         <param name="max_distance" type="integer" size="3" value="2" label="Number of allowed polymorphisms" help="Max Levenshtein's distance when looking for mutated barcodes." />
 	</inputs>