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comparison tools/smalt_wrapper.xml @ 1:b857363cc1db draft

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author cjav
date Wed, 13 Feb 2013 13:23:09 -0500
parents 87f4f05b44bb
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0:87f4f05b44bb 1:b857363cc1db
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140 SMALT is a pairwise sequence alignment program for the experimentingcient mapping of DNA sequencing reads onto genomic reference sequences. It uses a combination of short-word hashing and dynamic programming. Most types of sequencing platforms are supported including paired-end sequencing reads. 140 SMALT is a pairwise sequence alignment program for the experimentingcient mapping of DNA sequencing reads onto genomic reference sequences. It uses a combination of short-word hashing and dynamic programming. Most types of sequencing platforms are supported including paired-end sequencing reads.
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144 Please cite the website "http://www.sanger.ac.uk/resources/software/smalt/".
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144 **Know what you are doing** 148 **Know what you are doing**
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146 .. class:: warningmark 150 .. class:: warningmark
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148 There is no such thing (yet) as an automated gearshift in short read mapping. It is all like stick-shift driving in San Francisco. In other words = running this tool with default parameters will probably not give you meaningful results. A way to deal with this is to **understand** the parameters by carefully reading the `documentation`__ and experimenting. Fortunately, Galaxy makes experimenting easy. 152 There is no such thing (yet) as an automated gearshift in short read mapping. It is all like stick-shift driving in San Francisco. In other words = running this tool with default parameters will probably not give you meaningful results. A way to deal with this is to **understand** the parameters by carefully reading the `documentation`__ and experimenting. Fortunately, Galaxy makes experimenting easy.