Mercurial > repos > chrisw > monorail_test

changeset 38:318bff30468a draft

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Uploaded
author chrisw
date Wed, 20 Nov 2019 02:52:27 +0000
parents 5656cfea6d97
children 6c879705d61b
files monorail.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/monorail.xml	Wed Nov 20 02:42:57 2019 +0000
+++ b/monorail.xml	Wed Nov 20 02:52:27 2019 +0000
@@ -17,7 +17,7 @@
     </requirements>
         <!-- /bin/bash -x monorail.slim.sh ../ath10 4 10 ../ath10/gtf/exons.bed ./tmp2 ../fastqs/SRR8505407_1_100.fastq.gz ../fastqs/SRR8505407_2_100.fastq.gz -->
         <command detect_errors="aggressive"><![CDATA[
-            run_mr_snakemake.sh "$__tool_directory__/Snakefile"
+            $__tool_directory__/run_mr_snakemake.sh "$__tool_directory__/Snakefile"
             \${GALAXY_SLOTS:-4} 
                     "$index_source.fields.path"
                     "$index_source.fields.path/$index_source.fields.name/gtf/exons.bed"