# HG changeset patch
# User chrisw
# Date 1573711306 0
# Node ID 7f26c88a86d7f2d948c44aef57b248ae11a19e41
# Parent  e66c08660de68154a61a3c1784b93696e27ec7bc
Uploaded

diff -r e66c08660de6 -r 7f26c88a86d7 monorail.xml
--- a/monorail.xml	Thu Nov 14 05:33:19 2019 +0000
+++ b/monorail.xml	Thu Nov 14 06:01:46 2019 +0000
@@ -38,7 +38,7 @@
                     output="."
                     temp="./tmp"
     ]]></command>
-        <inputs>
+    <inputs>
  <!-- FASTQ input(s) and options specifically for paired-end data. -->
         <conditional name="singlePaired">
             <param name="sPaired" type="select" label="Single-end or paired-end reads">
@@ -72,11 +72,12 @@
         <conditional name="refGenomeSource">
                         <param name="genomeDir" type="select" label="Select reference genome index set" help="If your genome of interest is not listed, contact the Galaxy team">
                             <options from_data_table="rnastar_index2_versioned">
+                                <filter type="sort_by" column="2" />
                                 <validator type="no_options" message="No indexes are available for the selected input dataset"/>
                             </options>
                         </param>
         </conditional>
-        </inputs>
+    </inputs>
     <outputs>
         <data format="txt" name="auc" label="${tool.name} on ${on_string}: AUC" from_work_dir="bamcount_auc.tsv"/>
         <!--