# HG changeset patch # User chrisw # Date 1574217777 0 # Node ID 5656cfea6d97acf9b954cbce9703524e8aaa0737 # Parent ad4b5855143bbd26421e30e8396ffc47b144c03e Uploaded diff -r ad4b5855143b -r 5656cfea6d97 Snakefile --- a/Snakefile Wed Nov 20 00:47:20 2019 +0000 +++ b/Snakefile Wed Nov 20 02:42:57 2019 +0000 @@ -47,7 +47,7 @@ import re #limit the outputs/steps to only 1) STAR called junctions 2) all reads per-base coverage (BigWigs) 3) all reads exon summarized coverage 4) AUC (for QC) -STEPS_FILES_FILTER=re.compile(r'(unmapped)|(download)|(salmon)|(extract_jx)|(jx_bed)|(manifest)|(nonref)|(Chimeric)(fastq_check)|(frag)|(unique)') +STEPS_FILES_FILTER=re.compile(r'(unmapped)|(download)|(salmon)|(extract_jx)|(jx_bed)|(manifest)|(nonref)|(Chimeric)|(fastq_check)|(frag)|(unique)') def remove_steps_files(): #modify STEP and FILES #so we don't run download or unmapped steps diff -r ad4b5855143b -r 5656cfea6d97 monorail.xml --- a/monorail.xml Wed Nov 20 00:47:20 2019 +0000 +++ b/monorail.xml Wed Nov 20 02:42:57 2019 +0000 @@ -17,28 +17,27 @@