# HG changeset patch
# User chrisw
# Date 1550090587 18000
# Node ID 35ed7314038dafaa560f8b65c1eeb59f31e229b5
# Parent  f43dd6f7c687dd7741bc963c27605586dfae32b9
Uploaded

diff -r f43dd6f7c687 -r 35ed7314038d Snakefile
--- a/Snakefile	Wed Feb 13 15:37:51 2019 -0500
+++ b/Snakefile	Wed Feb 13 15:43:07 2019 -0500
@@ -25,7 +25,7 @@
 
 
 import re
-FASTQ_PATT=re.compile(r'([^_\.]+)_(\d+)\.((fastq)|fq)(\.gz)?$')
+FASTQ_PATT=re.compile(r'([^_\.]+)(_(\d+))?\.((fastq)|fq)(\.gz)?$')
 import os
 def prep_for_galaxy_run():
     try:
@@ -34,7 +34,9 @@
         pass
     fastqs = config['inputs'].split(',')
     m = FASTQ_PATT.search(fastqs[0])
-    run_acc = m.group(1)
+    run_acc = 'sample'
+    if m is not None:
+        run_acc = m.group(1)
     study_acc = run_acc
     if 'study' in config:
         study_acc = config['study']